FastQCFastQC Report
Sat 31 Dec 2022
SRR5849236.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849236.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171109
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGCCACTTATCTCGTATGC9330.5452664675733012No Hit
CTTATACACATCTCCGAGCCCACGAGACAGCCACTTATCTCGTATGCCGTCT8860.5177985962164469No Hit
ACAATTGGGGTTTTTAAGTTTTATCATCCATACTGAATTGAGAGATATGCTC1940.11337802219637774No Hit
TGCTAAGGGGATTCATTGTCTTTCCTTCCTTCATGCATGAATGAGTATAACA1900.11104033101707099No Hit
AAATATGGGTATTAATGTTTGATAAAGGTATATCCCAGTTAACTACACTGCT1890.1104559082222443No Hit
GAAAAAGGGCCATCAAGTCAGCCTCCAAAACATAAAGGAAAACAAAAATCTC1890.1104559082222443No Hit
GAGCGGGGGAGAACATATTTTCCTCCACCTGCCTTTTAAGTTTTTATTTCAG1880.1098714854274176No Hit
TATTCCGGGGATTTCAGAAAACCTTTGATAACTAATTGAGAAAATGCAGAAG1850.10811821704293754No Hit
CTTGAGGGTATTTTCAAAGTCAGATAAAAATCTTTTCTTTGCCTGGCCCTCA1820.10636494865845748No Hit
ACATCTGGGAAAGAGCTCAGCTGAGAGGATGAATGCAGAGGCAGAAATAAAT1800.1051961030688041No Hit
TTGCTGGGGGGACTTTGAAACAAATGCAATGAATGGCATCCACTAGTTTCAA1800.1051961030688041No Hit
TAGGCCGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG1800.1051961030688041No Hit
CGGATCACTGGAGCCAAAACCTGTCCCAGTTTTTCCCTGAGGCCATTTCTTT1780.10402725747915072No Hit
CGTTTGGGGGAAATGTGTGTTTACATAAAAGAATGAAGAGCACTAGAAATAA1760.10285841188949735No Hit
TAACGGGGGAATGTGTTTAATGTAAAAAAGGAATTACATTTATTGTAAATGA1750.10227398909467066No Hit
TCACAAGGGCGACTGAATTAGAAATGGAAATGCCTGGCACAGCCAGGAAGGA1750.10227398909467066No Hit
CCATCCGGGGTTTTTGTTCACAAGGAAAAGTGAAATGAAGCAACTTTTTCTA1750.10227398909467066No Hit
TACACGGGAGTTTCAGAATAAAAATATTGACAGTATATTGAATTTCTGAATT1730.10110514350501727No Hit
AGCTAAGGGAAAACAAAACATTACAATTATTGCTTCTTTTTATTTGTCTAAG1720.10052072071019058No Hit
TCAACCGGGAATCACAAGTTATATAGCTTTAATTAAAGTTTTTGATACGGAA1720.10052072071019058No Hit
CGTTAGGGGCTCTCATGTTATTGTATAAGACGAGACTTTTGGGCCAGCAGCG1720.10052072071019058No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)