FastQCFastQC Report
Sat 31 Dec 2022
SRR5849217.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849217.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences215579
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAGCCACTTATCTCGTATGC19460.9026853264928402No Hit
CTTATACACATCTCCGAGCCCACGAGACAGCCACTTATCTCGTATGCCGTCT18960.87949197278028No Hit
TTACCAGGGTTGCCTTTTCTCCACATCCAAACCAATACTTGTCTTTTGTCTT2690.1247802429735735No Hit
AGATTTGGGGTCCTTAGGAATTCTTTGTTGTTATCTCTCGCTCAGTGGGAAA2460.11411130026579583No Hit
GCACATGGGGACTTTGGATTTGTTTTAGAACATAAACCATAAAATGAGTGAC2370.109936496597535No Hit
AAGCCGGGGAAACACTGTATCAAGAACTGCCTCCTGAGATAAAGGAGCGATC2320.10761716122627901No Hit
AACCCGGGAAATGCTGATTTGGCTTTATTATTTTTCTATTTGCATTATCAAT2250.10437009170652058No Hit
GGCGCTGGGTAAAAATAAAGATTTATTGATGTTTTTTCCTCAGGTTTGTGGA2250.10437009170652058No Hit
TGAATCGGGATTGCCTGAGCGTTTGGAAGACATTTGCTTTCCACTTTTCCCC2190.10158688926101336No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)