FastQCFastQC Report
Sat 31 Dec 2022
SRR5849119.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849119.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93419
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGCCGTCT9571.024416874511609No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGC7670.8210321240861067No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCTTATAC1620.1734122608891125No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCT1060.11346728181633288No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)