FastQCFastQC Report
Sat 31 Dec 2022
SRR5849117.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849117.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92393
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGCCGTCT10661.153767060275129No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGC7290.7890208132650742No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCTTATAC1250.13529163464764649No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCT1080.11689197233556656No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)