FastQCFastQC Report
Sat 31 Dec 2022
SRR5849111.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849111.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57095
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGCCGTCT6751.1822401261056135No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGC5180.9072598301077153No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCTTATAC1040.18215255276293896No Hit
ACAGATGGGATGTACAGGATACTTAAAATGGAATAACTTTTTGGTTGCAAAA880.1541290831071022No Hit
AGCAATGGGTCTGTACAGAGCCGTAAAAACTGAAGTTCTGCCTCTGATGTAT860.15062614940012262No Hit
CTTTCAGGGGGGACACACCATTGTAACTTTTTGTTAGAGATGATCCCATTTA850.1488746825466328No Hit
TTCCGAGGGGGGAAGGCAAAAGGACATTCCAGGCAAAAGGAACAGCTTGAGC830.14537174883965323No Hit
GCGTTTGGGGTAGCAACTATACTTTCCAATGACTAAAGAAAGAAAATCTCAG820.1436202819861634No Hit
GGCGCGGGCAATCACCTCCAGTTATTACAGAGGAGCCCATGGCATCATAGTT800.14011734827918382No Hit
CTGCCGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC790.138365881425694No Hit
GCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCAAATCAACA780.13661441457220422No Hit
TTCGCGGGATAGAGAAAGTTGTTGCCACCTAATTTGATTGTGGGCTTTCTTG770.13486294771871443No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCA770.13486294771871443No Hit
ATTCTCGGGACTTTGTAGTTGAACTTGAGCTTCCTCTATTCAAAGATTCCAG770.13486294771871443No Hit
ACGTAAGGGGAGATTTTCCCAATTGAATTGACATTTCAGTTGTTGGTCTGTT770.13486294771871443No Hit
CTGCCGGGGGAAAAAACTTCTCTACAAAGTAACTAAGCCCTAGTAACAGAAA770.13486294771871443No Hit
TGTACAGGGAAGGCTGAATCATCTTCATGCAAATGAGTTCAGCATAATTTCC760.13311148086522462No Hit
TTACTAGGGCACTGTTTGAAATGTAAATTATTCTTAGAACACTTTCAATGGG750.13136001401173483No Hit
GTAGTAGGGCACGGCGGGATATGTCATACCTCCATTGGGGAATAAGCATAAC750.13136001401173483No Hit
TTAAGTGGGGATGCATACTTCAAATTAAAAAAAGATTTTTGGTAGCTAGGAG750.13136001401173483No Hit
GTTTCTGGGGGTATTGTTGGCGGAGTCCTTAGATCAGAGATTTTTGTTTTCG740.12960854715824505No Hit
CGAGCTGGGCTACCATTTCCCACAAGAATTTTCTAAGACAAGTGTTATTACC720.12610561345126542No Hit
GGCACTGGTAGCAGAAATATTTGGGCAACATAAGCCCACTGACTGGAGCTTT710.12435414659777563No Hit
AACAAAGGGATCCACTGTTTGAGAGAAAGATAATATGAACCACATTCAATCA710.12435414659777563No Hit
TCACTTGGGGATTCCGAGGATAGTGTGAAGGATGGATTAGGAGATGAAGCTG700.12260267974428583No Hit
AACGGGGGGAAAAGGGATTTTCTGGTCTGTTTCTGACTTTAAGTTACACATT700.12260267974428583No Hit
TGACAAGGGACAGTACTTACAGAGAAATTTATAACTACAAATGTCTATATAA690.12085121289079603No Hit
ATTGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA690.12085121289079603No Hit
TGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCTTGAATCATCCTTTT690.12085121289079603No Hit
TGACATGGGATGTTTAGCCTGAGTCATGGCCCCTTTAGATGAAAACATTGGT690.12085121289079603No Hit
AGCAGTGGGAACTTCAGTAAGAATCAACTATGTGAAATTCCAAAAAGGATGG690.12085121289079603No Hit
CCCTGATGAACATAGATGCAAAAATCCTTAACAAAATACTAGCTAACCGAAT680.11909974603730625No Hit
GGCACAGGGATAGTTGAAACTAAAGAAACATAAATTTTTCATTCTGCCTCTT680.11909974603730625No Hit
GTAAACGGGAAGTCCTTCCCTGGACATCTCCCTGCCACCCTCCCCTGACCTT680.11909974603730625No Hit
ATGGAGGGTAGCCTTGTTCCCTCAGGTAAAATTTAGGACCCTGCTAGCTGTG670.11734827918381645No Hit
ATTAGGGGAGCCAAGCCACACGCTGAAATTCTCCTAACCTTTAAATGTGCAC670.11734827918381645No Hit
AGCCAGGGGCTAAGTTACACCGGTGTTTCTCCAACTGTGGCCACAATTCATT670.11734827918381645No Hit
GGTTTTGGGGAGAGTCCCTGTATTGGCAAGTAGTAGCCAATCTGGAGACTCT670.11734827918381645No Hit
TTTTGGGGGACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTT670.11734827918381645No Hit
AGAGATGGGGTGAATAATAGGAATATATTTTGCAGAATCTAACATAATACCC660.11559681233032665No Hit
TCTACGGGATAAATTCTAGAGTTACTATTAGTGTTTTTCTAATGGATCTTTG660.11559681233032665No Hit
GTAACGGGGGTGGACATTTGAGCAACTTTTGCTGACAGTTTATAACATCTCA660.11559681233032665No Hit
GATAATGGGAATATTTTTTGGTATAACTTCCAGTATAGGAAGAGTAAATGAG660.11559681233032665No Hit
TACGCTGGGATTTGAAAATACTGATGAAAACTTAAAAATGTAACGTGAGGAA660.11559681233032665No Hit
ACAGTGGGGTTATTTACATCAAATAATGAAATAACTGAAATGTACAAATGTC660.11559681233032665No Hit
GCTCTCGGGGGATGAGACAATAGTTGTAGGAATGACCAATGGAATACTGAGT650.11384534547683686No Hit
AGTCTAGGGATTAAAGGCTAGGTTTATTTGGGCAGTATTAGAAACAAAATCA650.11384534547683686No Hit
GTATCCGGGACCTAAGCTGAATTCGGAATGCAAAAGTTATTGTTGGCTACAG650.11384534547683686No Hit
GTAGAGGGGCTATCTGCAAATGAGAAATTCACAAGCGCACAGGAATTTTCTT650.11384534547683686No Hit
TAACACGGGAGGAAGATAAACTTGTCAACCCAGAATTCCATATCCAACAAAA650.11384534547683686No Hit
GCTTCAGGGGGAACACTCAAACATGGCTGGTAGGAATGTAAAATGGTGGAGC650.11384534547683686No Hit
GTAAATGGGCTAAGGAAAATGTTTTTAAAACCAGAAAAGGTAGCTTAATCTA640.11209387862334706No Hit
AAGCCTGGGTGACAAGAGTGAGACTCCGTCTCCAAAAAAAATACGCATTTTG640.11209387862334706No Hit
ACAGCGGGCTATTCAGAAGAGAAGGGAGAGTCATTGTACGAGGCCCAAGATA640.11209387862334706No Hit
AGCTGCGGGTAATTTAAGTATAAAGTAAAATAATGGGCATTATCATTGGATG640.11209387862334706No Hit
TTGCTAGGGGACTTAAAACATGACAGTAAGCATTTACACTGTTGGAAGGTAA640.11209387862334706No Hit
GCAGCCTGTCCTCATTGGAAACACCATAAGAAGTCACCTCATTCAGTTACTT640.11209387862334706No Hit
TTCTCAGGGGTAGGCAGTGACATCATAGCCTTGTTCCTTCAGCCACACGAGG630.11034241176985726No Hit
GACACTGGGATCCTAAGAGAAAGCTTTCATATTTAAAAAAAAGTCTTTTCAG630.11034241176985726No Hit
CAAGCAGGGGAAAAATATATATGATAGAAAAATTGAGTGTTTTTCCCCCAAA630.11034241176985726No Hit
ATCTTAGGGAAGGAGAAGAGGATAATTGTAGATTGGGCTGATCACAAAATAT630.11034241176985726No Hit
GGGTGAGGGGGGGACATTCACTATAATGATCTAAGAAGCTACAGATTGTCAT620.10859094491636745No Hit
ACATAAGGGAGGTTTAGAACAGTTTCAATTTGGACTCTAATATTAATTGGTT620.10859094491636745No Hit
TTGTTCGGGAACAATTAAAATGAACTGTTTAATGAATATATTTGAATATAGC620.10859094491636745No Hit
AACACAGGGGACTTTTTAGATGTAATACCAAAGGCATGATCTTAGAAAGAAT620.10859094491636745No Hit
ATTTGAGGGACGTGCTCAGGAAATTAAAACAAAAATCAAGGAATTGAACAAC610.10683947806287765No Hit
TTCTCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC610.10683947806287765No Hit
ACTCAGGGTACCTCTAAAGCAAATCTGCAGTGTTCCAAAGACTTTGGTATGG610.10683947806287765No Hit
TTACCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC610.10683947806287765No Hit
GCTCTGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC610.10683947806287765No Hit
CATAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA610.10683947806287765No Hit
CTAATTGGGTGAGTAATTTAATGCCATTTGAGAAAAAAATAATTTTTTTCGT600.10508801120938786No Hit
AGCTTGGGTGACAGAGCGAGACCCTTTCTTCAAAAAAACAAACAAACAAACA600.10508801120938786No Hit
ATCTACGGGATATGCAGATTCTCCACTGAGCAAATGTTCAGCACTCTTAACT600.10508801120938786No Hit
AGGAACGGGATTCCTTTCTGCATTTATCTATCCATATTTTAGGAAGAAGAGC600.10508801120938786No Hit
TCGCATGGGAGCAAGCTAAAGAAACCATCATAATCTAAAATTGCTTCATTTA600.10508801120938786No Hit
ACCGCCGGGGCAGATGGTTTGCCTTGCCTTTCCACCCCCTAATTGTCAACCA600.10508801120938786No Hit
TAACACGGGACCTGTGTGGATATGTTGAATCAATAGGGATATGAATTACATA600.10508801120938786No Hit
GAACATGGGAAGCGAGAAGAGAGCCGGTGGAGTGTACTTGTCCCTGACAGGC600.10508801120938786No Hit
GCCTAGGGACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGC600.10508801120938786No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAAACTCGTATGC600.10508801120938786No Hit
CGCATTGGGTTACTTACCGTATTTCATAGAAGGGAAGGAAAAATGTAAGGTT600.10508801120938786No Hit
TATCAAGGAGGGTTGAATCTGAATTGGCTTCTCAGGCTCAAGGTAACAGTGT600.10508801120938786No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCT600.10508801120938786No Hit
CCATGGGGAAGGAAAAGCCGCGCTCTCTCTTGGCTATCTCCCCTTCCCCCTA600.10508801120938786No Hit
TCAGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA600.10508801120938786No Hit
TAATGTGGGATACAAAAACCAAGTATTTGTGATGGAGTCGTTGACATGACTG600.10508801120938786No Hit
ATTGAGGGCGATCTAGTAAGGGTAGACATGATGTACTTGCAAGATCAATTTT600.10508801120938786No Hit
AATATGGGGACTTAGGTTCAAGATCACTGTTCAAACCCTGTCATGCTTTAAA600.10508801120938786No Hit
TTTACTGGGATGGTAGTCTCAAGTTTTTGTGTTTTCTTAAAATGTACCAGTG590.10333654435589806No Hit
CGTGATGGGAGGAATGGCCATGACACTGCTTTTGACCTTAGAAGTGGATCCA590.10333654435589806No Hit
TCGCTAGGGCAACAGAGATCAGCAAATAAATATAACCAAAGATTGTCCATTA590.10333654435589806No Hit
ATGTGGGGTCAAAGAGCATATTTTCTTCTTCTTGTATCTGTCATGAAACTGT590.10333654435589806No Hit
GGTTTTGGGGACAGCAACATGTAGAAGATGTTCAGCGTGCAGGGCTTGCTTT590.10333654435589806No Hit
TTATTAGGGCGATCTTAGCGGGGAACCAGGGAGAGATATTCCAGGGCTCAGC590.10333654435589806No Hit
AAAATAAAAATTGAAAAAGAAAAAAAAGAGAGAGAAATATGATTTGAGAGTG590.10333654435589806No Hit
TAGAACGGGGTATGTAAGGTACAAAGTGTTATTAATCAGAAACAGGAAGAGA590.10333654435589806No Hit
TCACGTGGGAATCTCAAGGACTATTGCTAACTAACCCATGGGACTCCCACTA580.10158507750240826No Hit
CTTTGTGGGAGAACAGCACATGGTCACAACAAGATATTTTCTTTCCCTCCAA580.10158507750240826No Hit
AAGTAAGGGGTGTTAGGACCTATGAATCATCAATAAAAACAGTTGCTTCTGT580.10158507750240826No Hit
ACAAAAGGGGAACCCAGTATCTCAGTTGGAAATGCGGAACATGGGATTGGAA580.10158507750240826No Hit
GTACTAGGGAGGCGTGAGCCACCGCGCCCGGCCAACTGTATCCAATTCTTAA580.10158507750240826No Hit
AATATTGGGAGATCTACATTGTGATAAGATTGGACCAGTGGATCACATTGAA580.10158507750240826No Hit
GGGTTGGGGCAAACCAACCACCATCAAGAAGCACAAAGAGGGTTATTACATA580.10158507750240826No Hit
TTATGGGGGAAGAGATGGATGAGGAAGAATTTTCAAACTTGAGGGAACAAAT580.10158507750240826No Hit
TTTTCGGGGCTGAAAGATAAAGAAAGTGCTTTGTATTTTGTTGAAGTCAGTA580.10158507750240826No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)