FastQCFastQC Report
Sat 31 Dec 2022
SRR5849110.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849110.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208946
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGC14400.6891732792204684No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGCCGTCT13560.6489715045992744No Hit
GCCGAAGGGGGTCGTCACTCGTGTCTCGCTACCAGCTCCCCGCTGCCCTGCG2360.11294784298335454No Hit
TCAATTGGGAACTTTCCCAACCAGCAGAACCATGAGCCAAATAAACCTCATT2190.10481176954811292No Hit
GCGGCTGGGGAAGGCAGAAATAAAGATGTTCCTTGAAACCAACAAGAAAAAA2180.1043331769930987No Hit
CATTGCTGGGAGCCAAAGACAAAAGACATAAACTTGTGGCAGGCCTATGGCC2100.10050443655298498No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)