FastQCFastQC Report
Sat 31 Dec 2022
SRR5849108.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849108.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206646
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGC14290.6915207649797238No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGCCGTCT12570.6082866351151245No Hit
CGCCATGGGTGTAAGGGGCCAATTCTAAGTATTCTTCACGGCAGCCAGAAGT2160.10452658169042711No Hit
CATTGCTGGGAGCCAAAGACAAAAGACATAAACTTGTGGCAGGCCTATGGCC2100.1016230655323597No Hit
TCAATTGGGAACTTTCCCAACCAGCAGAACCATGAGCCAAATAAACCTCATT2070.10017130745332598No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)