FastQCFastQC Report
Sat 31 Dec 2022
SRR5849098.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849098.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51629
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGCCGTCT7341.421681613046931No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGC6491.2570454589474909No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCTTATAC1330.25760715876735946No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCA880.17044684189118517No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCCTGTCTCT840.16269925816885858No Hit
GTTCAAGGGTTATTATATTGTATGTTAATATTTTATGAACTGGTCAGCCATC820.15882546630769528No Hit
AAAGTAGGGGATGAAATGAAATGAAATGAAATGAAATAAATAAATAAATGAA790.15301477851595033No Hit
TCAGTTGGGAAGCTCACATGGCAGTGAGATGTTGAAAAGTCAAAAGAGACCT760.14720409072420537No Hit
AGCTATGGGGGAGACAGGTGGAAACCAAAGTTCGAGCTAAAATCCGTAAGAT750.14526719479362374No Hit
AAGTCAGGGGAGGGACCAGAGCGGCGTTCAGGAGCTCGTGAAGCAAGTGCTG750.14526719479362374No Hit
TTAGCAGGGATCTACAAAATGGTAGGCACTGTGATCATGATGAAAATGAATG710.13751961107129712No Hit
AAAATAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA710.13751961107129712No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCGTATGCCTGTC700.1355827151407155No Hit
GAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGGCAAAAAC690.13364581921013383No Hit
CGTTATGGGACAAGATAAAAAAACAGTCCTATCAAAAAGTGGGCAAAGGATA690.13364581921013383No Hit
TAAGCAGGGAGACAGATCAACGAGACAGAAAGTCAACAAGGATACCCAGGAA680.1317089232795522No Hit
ACGACGGGATTGTTCCTTGCAGTATAGAAGGCAAATGCAATTATAGTCTTTA680.1317089232795522No Hit
GCCAATGGGAAGAGTGTAATGATTTCACTTATCACATAGTATTTCACATAAT680.1317089232795522No Hit
GTTTTTGGGTTTGCAGGATGACCTCAGGGCTATGTGGATTGAGTAATGGGAT670.12977202734897053No Hit
CAATCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA660.12783513141838887No Hit
ACTCCATGACAAGGGGAAGTCCATCCAAGATTTACGGCGACGATTCTTCCTT650.12589823548780724No Hit
GTGTGCGGGGAGGAATATGAAGTCCATTCCCTTCTTTCTTCTCTTGAATAAT640.12396133955722557No Hit
GCAGTGGGGGTCCATTTTTTTAAACAATAGAAATATGGTCAAGGTATTAATT640.12396133955722557No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAA630.12202444362664393No Hit
TTCTTAGGGACACGACATGCGGCTTTTCTGCATCAACTGCTATGACGGTTAA620.12008754769606228No Hit
TCAAGCAGGGAGGATACAAAGTGTGATTTGTTGGAAACATGTCCCAAATTTC620.12008754769606228No Hit
GACTCAGGGAAGGCACACCTCATTTTGTTGCACTTTTATTGCACTTTTCAGA620.12008754769606228No Hit
TTTGACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC610.11815065176548063No Hit
CATGGAGGGACAAGAGAAGAACAAGGAGCTGATGGATGAATATAATCATTTA610.11815065176548063No Hit
CACCTCGGGTGCTTAGATCATCCATAGGTGTTTCTTCTGCTTGAAGCTGCTA610.11815065176548063No Hit
GTGTCGGGGGTTCTTCATTTATTAGGCCAAAAATTTCTTGTGGTGAGGAGAG590.11427685990431732No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGCTCCAATCTCTGTCTCTTATA590.11427685990431732No Hit
TACGTTGGGACCCGGCCCTGGGAATATTTTCTATGTTACATTTATTTTTTTC590.11427685990431732No Hit
ATGCACGGGGTTCCTTTAGCTGCGGGATTTCAGTGGTACCTTTCTCAAACTC590.11427685990431732No Hit
CTTGCACGGGAACTCAACAATGGGTTACATGGCAGCAAAGAAACACCTGGAG580.11233996397373568No Hit
CTTGCTGGGACTATTGAGAACTTGATACCTACTAGGATGGTTAAAAGAAAAA580.11233996397373568No Hit
GTCACTGGGATGGTTTAAATGGCAACATATCTATAAGTATGTATACACATTA580.11233996397373568No Hit
TTCTTGGGGCATCTCGCCGTGAGACAGCAAGTGTCGGATCCGCAGGCGCAGC580.11233996397373568No Hit
GTCTTTGGGGAAAAACCTAAACAGAAAGCTACTTCTAAAAGTAAAAAATCTG580.11233996397373568No Hit
AACGGCGGGAACACTCTCTCGCCCACTTCTACTTTGCGCGATTCCTGTCTTA570.11040306804315403No Hit
CATAGGGAGAGCATTAGAAGAGCAGGAGCTGTCTGTTCACACGTGTTGGGGA570.11040306804315403No Hit
TATGGCCGGGGCAGGGGGACCAGCAGGCATGGTTTGGTTTCGCTGGCACACC570.11040306804315403No Hit
AACTAAGGGCTGTTGAGGTCATAAAAATAATAAAAGTCCGAGAAACTGCCAC570.11040306804315403No Hit
ATAACCGGGGTCCATAAAGTTGTTAATTTATTATTTTATCTGTATTTTTATT560.10846617211257238No Hit
TGAGACGGGGGAGCGCATTGATACTAGAAATGAGTTGGAAAGCTATGCCTAT560.10846617211257238No Hit
AGTTGTGGGATTTGTATAACAGTTCAAAGTGAATTTTTCTTTTGACAAATTA560.10846617211257238No Hit
GACAAGTGGGGGTTTTGAGGACTGTAAAAGTGATTTCATACTCTGAATATAA560.10846617211257238No Hit
CTCAGTGGGGTTTTGAAAGTGGGCAATTTGTCACCTCACTTGCAGAATATCT550.10652927618199075No Hit
ACACTGGGAGTGACACAGGAGAAAGCCAAAACATTATTAGATAAAGCCCTGA550.10652927618199075No Hit
GTTCAAGGGATGTATAATTAGAGTTTTCTAATTTCACTGTGAGATCTCTAAC550.10652927618199075No Hit
TACGCTGGGGGGCCCCGCCGGTCTACGCGCCCCCTGCCGCGCCGGGCCCCTA550.10652927618199075No Hit
TTATAAGGGAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTA550.10652927618199075No Hit
TATTAGGGGAACTTGTACAAGTATTTTTACTGATGGAGCAGGAACTCACTGC550.10652927618199075No Hit
GTCGGTGGGAAGGATTAAACATCCAGAATACATACAAAACTCCCAAAATGCA540.1045923802514091No Hit
TTTAAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC540.1045923802514091No Hit
TACGCTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA540.1045923802514091No Hit
AAATCGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC540.1045923802514091No Hit
TGACGAGGGAATTCAAGGATGTCTAGAAACAAAATAATCTGATTGCATTATA540.1045923802514091No Hit
CTTCTGGGGACTGTTGTGATTTACATGTGGTTATAAAATCTAACATAGAAGT530.10265548432082745No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGCTCCAAACTCGTATGC530.10265548432082745No Hit
CTAGGGGCATGCTAAGAAAATAGTGACTATTTTGAAGTATGCTACTTCCCTT530.10265548432082745No Hit
ATAAGGGGGGGCATGATGGGAGCAAAGAAGATGGACCTAGTCAGAGGTGAGG520.1007185883902458No Hit
TGTACTGGGAGTTGTCTCCACTAAATCAGAAAAAAAATAAAAATATCCCAGG520.1007185883902458No Hit
TGCGGCGGGATGACATGAATCAGTATGAAAATGCTGAGAAACTTTATTTGCG520.1007185883902458No Hit
TAATTGGGGGGTGGTATGTAACAAGAGTTACGTATCCAGGGGCTTGTGCCTT520.1007185883902458No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)