FastQCFastQC Report
Sat 31 Dec 2022
SRR5849083.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849083.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169955
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGCCGTCT19551.150304492365626No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGC17941.05557353417081No Hit
CATTCTTCTAGAGATCAGTGAAGGAGCTGATTCTTTTATTACTTCATATAGC2160.12709246565267276No Hit
GTGCTAGGGGAAAAGAAAAAGGCAGAAATAATATTTGAGGAAATAATGGCTG2070.12179694625047807No Hit
ATGGTAGGGTGTTATTCACAGACAATTGTCTTGTTTCAATCCTTTTCAAAAG2060.12120855520578978No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCCTGTCTCTTATAC1900.11179429849077697No Hit
ATGGCCGGGATGGATACTATTTCTAGTAATGTAATTTTTATCAGAATTGCCA1740.10238004177576417No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)