FastQCFastQC Report
Sat 31 Dec 2022
SRR5849063.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849063.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences334575
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGCCGTCT41211.2317118732720616No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGC32930.9842337293581409No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCCTGTCTCTTATAC4060.12134797877904804No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)