FastQCFastQC Report
Sat 31 Dec 2022
SRR5849062.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849062.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences328470
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGC29740.90540993089171No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGCCGTCT29430.8959722349072975No Hit
CAACCAGGGATATTCTGGTTACCCCACAACCTTGCTGATGCCTGTCAGTTAA4920.1497853685268061No Hit
AACGCTGGGATGTTAAAGAAAGTACCTATGGAGGTTGAGACTGAAAGACAGT3610.10990349194751423No Hit
GGCTATGGGTACAAGTTAAACTTTTGTTTATCTTTCCACTGGAATGGCTAAT3470.10564130666423112No Hit
GTTCTGGGGGAGGCAGGATGGGGAGGGACTTTACCAAATTTTTAAATTTCAT3440.10472798124638476No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)