FastQCFastQC Report
Sat 31 Dec 2022
SRR5849061.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849061.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences326653
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGCCGTCT29620.9067726302835118No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGC29090.8905474616795193No Hit
CAACCAGGGATATTCTGGTTACCCCACAACCTTGCTGATGCCTGTCAGTTAA4580.14020994755903055No Hit
AGATTGGGGATACCTTGATGGAAATGTATGGAAAGCATACAGTTGGACCGAG3730.11418845074130653No Hit
TGAACGGGGACAGTTCTTTTGTAAAGAGAGGAAAGTTATTAAACAAACTCTA3660.11204550394455279No Hit
GAACAAGGGAACAATAATAGATGGCACTGATTGTCCTGCTAATTACAGGGAA3610.11051482766115725No Hit
GTTCTGGGGGAGGCAGGATGGGGAGGGACTTTACCAAATTTTTAAATTTCAT3600.11020869240447814No Hit
TTTTTGGGGACCAAATACAAGCAGTATGGAAAACCCCGCACCAAACAAGAAT3380.10347371675753783No Hit
GGCTATGGGTACAAGTTAAACTTTTGTTTATCTTTCCACTGGAATGGCTAAT3300.10102463470410497No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)