FastQCFastQC Report
Sat 31 Dec 2022
SRR5849060.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849060.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences328689
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGCCGTCT28310.8613004998646137No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGC27830.8466970297150194No Hit
CAACCAGGGATATTCTGGTTACCCCACAACCTTGCTGATGCCTGTCAGTTAA5160.15698730410813871No Hit
GTTCTGGGGGAGGCAGGATGGGGAGGGACTTTACCAAATTTTTAAATTTCAT3830.1165235222353045No Hit
AGATTGGGGATACCTTGATGGAAATGTATGGAAAGCATACAGTTGGACCGAG3670.1116556988521064No Hit
GGGCGGGGGAGACTCTGGTTCATCAGGAGTAAATGACATGATATGTGATAGA3380.10283276897005984No Hit
TAATCAGGGATTTTATTACTTAGCTCTTTCTTGGTTGCCTAATAAAAGCCTG3300.10039885727846079No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)