FastQCFastQC Report
Sat 31 Dec 2022
SRR5849040.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849040.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences293603
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGCCGTCT54341.8507985272630048No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCTCGTATGC49071.6713044485240274No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCCTGTCTCTTATAC4040.13760077383405483No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGC3170.10796892402325589No Hit
GAACTGGGGGGATCTAATTGACTGAAGAGTTTCTGCACAGCAAAAGAAAACT3150.10728773207358236No Hit
ATCGATGGGAGGTCTCCCCATCTCTGATCAAGGCAATGCCATCCTCCGGTTG3090.10524415622456174No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTCTCTGCATCCTGTCTCT3070.1045629642748882No Hit
CTCACTGCGGGAACGTGATTACATTGTCGTCAGTGAATGTGATATGTCTATA3040.10354117635037788No Hit
TCGATAGGGATTTTGACAAGTGCATGATTTCACTTTAAACAATTTGATATAG3030.10320058037554113No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)