FastQCFastQC Report
Sat 31 Dec 2022
SRR5849008.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849008.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132997
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC12890.9691947938675308No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT11180.8406204651232735No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC2450.18421468153416992No Hit
CTTTAAGGGATAGCAGAGATGTCTTTAAAGAAAAGTTCTGCCTGGCATTTGA1680.12631863876628796No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATAT1560.11729587885441024No Hit
TCTCAGGGGAACTCACTGCGGCCTTGGACACCTGAGCTCAAGCGATCCTTTC1540.11579208553576398No Hit
TTTAAGGGGCTGCTCCTGAACGACTACTGGGTAAATAACGAAATCAAGGCAG1530.11504018887644084No Hit
ATGACTGGGGAAATTGCTAATTTTACAAATGGCAGAGTGGTGAAACGTGGCA1520.11428829221711768No Hit
TATGTGGGGTCGACCCAAAAACACAGGCAACAAAAGCAAACATAAACACATG1490.11203260223914827No Hit
TTATTAGGGACTTACTAACACACGACATGCGGCTTTTCTGCATCAACTGCTA1490.11203260223914827No Hit
CTGCTTGGGAAGGACGGGACCATCTAACGCTGCCTCTTTTTCAGAAAAGAAT1470.11052880892050197No Hit
GCTAAAGGGCCGATCTGAAAGGGGGGCCAATAAAAACGAGAGAGGCCTTACC1390.10451363564591683No Hit
GTGTGGGTTCCTAGTTTCTCATGGGTATAGTTTTACAAACACTTTCATTCTT1380.10376173898659369No Hit
CATACTGGGGTCAAGTCAAACCTTTTTACTTAAAAGGCAAACAATAGACTGG1370.10300984232727055No Hit
CTCTACGGGATTCTCATGAGAAAGGAAACTTGTGAAGAAATTTCTAAATTCT1330.10000225568997798No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)