FastQCFastQC Report
Sat 31 Dec 2022
SRR5849007.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849007.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132976
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC12430.9347551437853447No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT10810.8129286487787271No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC2210.1661954036818674No Hit
ATGACTGGGGAAATTGCTAATTTTACAAATGGCAGAGTGGTGAAACGTGGCA1870.14062688003850318No Hit
CTTTAAGGGATAGCAGAGATGTCTTTAAAGAAAAGTTCTGCCTGGCATTTGA1620.12182649500661774No Hit
TATGTGGGGTCGACCCAAAAACACAGGCAACAAAAGCAAACATAAACACATG1550.1165623871976898No Hit
TTTAAGGGGCTGCTCCTGAACGACTACTGGGTAAATAACGAAATCAAGGCAG1510.11355432559258813No Hit
TCTGCAGGGAGGCAGGGACTAGATCGTGTAATGCATCGTAGGCATGGGGAGG1500.11280231019131272No Hit
ATGTCAGGGATGGTTAAATAAATATAGCACAACTGTTTCTGCAAATTAGAGT1490.1120502947900373No Hit
CATACTGGGGTCAAGTCAAACCTTTTTACTTAAAAGGCAAACAATAGACTGG1470.11054626398748646No Hit
CTGCTTGGGAAGGACGGGACCATCTAACGCTGCCTCTTTTTCAGAAAAGAAT1450.10904223318493564No Hit
GAGCTAGGGGCCTGGGCAACATGGCGAAACCCTGCCTCTACAAAGAATACAA1440.10829021778366021No Hit
GCGCTCGGGTTGTGGGTAATATAAAATTCCTTAACCTGATAATATTGCAGCT1430.1075382023823848No Hit
GTAGGAGGGGTCTGATTTTGATGTATCTAGGTGTGGCTGTCTTAGAGTTTAT1390.1045301407772831No Hit
CAAGGTGGGATTGGGAGACTTAGAAGTTAGACAAATCCTGGTTCATATCACT1370.10302610997473229No Hit
GATTTTGGGATGGAGATGTCTATGGAATTTGCACCAAATTGAAAACATCTCC1360.10227409457345686No Hit
GCTCCCGGGGGTATGACTGTGTGGCTGAATTCTAGGATATTAGATATAAACA1350.10152207917218145No Hit
GTTCGAGGGGGGTGAAGCGGGGGTGGGATCTGAACATGGCGGCGGTGGTAGC1350.10152207917218145No Hit
ACTTTTGGGGTGAATATCAAATGCAGAACAAGAGAGCTAAGATGAGAATGGG1350.10152207917218145No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)