FastQCFastQC Report
Sat 31 Dec 2022
SRR5849006.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849006.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133699
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC12290.9192290144279315No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT10910.8160120868518089No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC2090.15632128886528693No Hit
TATGTGGGGTCGACCCAAAAACACAGGCAACAAAAGCAAACATAAACACATG1750.13089103134653213No Hit
GAGCTAGGGGCCTGGGCAACATGGCGAAACCCTGCCTCTACAAAGAATACAA1690.12640333884322247No Hit
CTTTAAGGGATAGCAGAGATGTCTTTAAAGAAAAGTTCTGCCTGGCATTTGA1600.11967180008825794No Hit
ATGTCAGGGATGGTTAAATAAATATAGCACAACTGTTTCTGCAAATTAGAGT1540.11518410758494828No Hit
AAAGCCGGGCGATCTAGCTATGGGAATAATATAATATTGTATTACTGTTGGG1540.11518410758494828No Hit
CATACTGGGGTCAAGTCAAACCTTTTTACTTAAAAGGCAAACAATAGACTGG1520.11368821008384505No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATAT1480.1106964150816386No Hit
ATACTTGGGTGAAGGCAAGTTTAGGAATCTCTAGAACCACAGAAACACAAAT1470.109948466331087No Hit
GTTCTTGGGAAGCAAAATCTGTTACCCCTACAGGGTTTAGAACCTAAGTATT1450.10845256882998378No Hit
AGTTGGGGGATGTGAATGGGATCTTGCTTTTCTCTCTCTCTCAAAATACCCT1440.10770462007943216No Hit
GCTGCAGGGGAATTATGCCCAGATAGTCCATCTGAGCTGTGGCAAATAGCAG1430.10695667132888055No Hit
CGGCCTGGGAACACAGAAGCAAATGGAGTGTGACAGAGCTGAAGTTATATTA1420.10620872257832895No Hit
TTATTAGGGACTTACTAACACACGACATGCGGCTTTTCTGCATCAACTGCTA1400.10471282507722572No Hit
TCACTAGGGATAAAATGTCACCAAAAAGTTGACTTTGAATTTGTTGGACTTT1390.1039648763266741No Hit
CAAGGTGGGATTGGGAGACTTAGAAGTTAGACAAATCCTGGTTCATATCACT1380.1032169275761225No Hit
GCGTGAGGGAGAGAAACCATTGAGTGGTTAAATGTTGCTTTTCTTTGTTTTG1370.10246897882557088No Hit
CACCCCGGGAAATAAATAAACAAACAAACAGACAACCTAGACATGGCAAAAA1360.10172103007501924No Hit
GTGTGGGTTCCTAGTTTCTCATGGGTATAGTTTTACAAACACTTTCATTCTT1350.10097308132446764No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)