FastQCFastQC Report
Sat 31 Dec 2022
SRR5849004.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5849004.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177786
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT15660.8808342614154095No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC13890.7812763659680739No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC2730.1535553980628396No Hit
GTGTTAGGGTATCCAAAATGAAATGCAGAGAGAAAAAAGAAACCAGAAAAAA1780.10012036943291373No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)