FastQCFastQC Report
Sat 31 Dec 2022
SRR5848993.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848993.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107056
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT15681.4646540128530863No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC13911.299319982065461No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC2860.2671499028545808No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATAT2090.19522492900911673No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATA1320.12329995516365266No Hit
ATTTCAGGGGCTGTCTCTGTCTGGTTCACCATTGCATTCTCAGGATCTAGAA1270.11862950231654461No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGT1170.1092885966223285No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCC1110.10368405320579883No Hit
TTTGCTGGGATAGAACGATTTATTTCTTTCCCCACTGATTTGACATGTCACC1080.100881781497534No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)