FastQCFastQC Report
Sat 31 Dec 2022
SRR5848992.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848992.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106545
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT15411.446337228401145No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC14021.3158759209723592No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC2520.23651978037448965No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATAT2250.2111783753343658No Hit
TTTGCTGGGATAGAACGATTTATTTCTTTCCCCACTGATTTGACATGTCACC1450.1360927307710357No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATA1380.12952273687174434No Hit
ATTTCAGGGGCTGTCTCTGTCTGGTTCACCATTGCATTCTCAGGATCTAGAA1340.12576845464357783No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCC1300.12201417241541133No Hit
ACTAAGGGGATGAGAAAGAAAACATTTCAGGTAGAAGGACCGATAATGAAGC1220.11450560795907831No Hit
CGTCGGGGGCTGCCTTCTAGGCAGGAGCAAGAAAGAAATGAAATAGCAGATG1130.1060584729457037No Hit
TGCAACGGGCCGATCTATAAGCGGGATCCTAATAATTTTGTGTCTTTTTATA1100.10324276127457882No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)