FastQCFastQC Report
Sat 31 Dec 2022
SRR5848991.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848991.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107320
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT14721.3715989563920985No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC13191.2290346626910176No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC2770.25810659709280653No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATAT2060.19194931047335073No Hit
ATTTCAGGGGCTGTCTCTGTCTGGTTCACCATTGCATTCTCAGGATCTAGAA1520.14163250093179278No Hit
TTTGCTGGGATAGAACGATTTATTTCTTTCCCCACTGATTTGACATGTCACC1440.1341781587774879No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATA1340.12486023108460678No Hit
AAACCAGGGATCTTAGACTGAGTATGTTATAATTAATTATTTAAAAAACTAT1320.12299664554603057No Hit
GTTCCAGGGAACAAAAAACATTTTACTAAAACATAAGACTTACAGAAGTTTC1140.10622437569884458No Hit
ACTAAGGGGATGAGAAAGAAAACATTTCAGGTAGAAGGACCGATAATGAAGC1090.10156541185240403No Hit
CGTCGGGGGCTGCCTTCTAGGCAGGAGCAAGAAAGAAATGAAATAGCAGATG1080.10063361908311591No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)