FastQCFastQC Report
Sat 31 Dec 2022
SRR5848989.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848989.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences307903
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCGTCT37201.2081727037411132No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGC25550.829806789800684No Hit
CTTATACACATCTCCGAGCCCACGAGACGGGAATATATCTCGTATGCCTGTC6540.2124045559802925No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)