FastQCFastQC Report
Sat 31 Dec 2022
SRR5848978.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848978.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92276
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC5410.5862846243877065No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT5350.579782391954571No Hit
CTCAAATTGGGTAGCCTTTCAGAATGGGAGTAAGCTTTGCAATCAACCTGCT1090.11812388920195935No Hit
TCGTCCGGGGTGAGTAGATAGATGGATGAAAGAATGGATGGGTGGGTGGATG1070.1159564783909142No Hit
CTAATGCGGGTCTCTGGTCGCAAGATAAAGACTGCTGTTAGACGCAGGAAAT1070.1159564783909142No Hit
CCAGACGGGGAATATTTCATATGAATGAAATCATATACTATGTGACCTTGTA1050.11378906757986908No Hit
CGCTTCGGGCGGTGCTTCTCAGATTCTCTCACAGTTTTGTGAAATTAAAACT1030.11162165676882396No Hit
TCTATAGGGAAGACTGAAGAAAATAGAATAGAATTTTATGGAAATAACCATT980.10620312974121114No Hit
CCGTTAGGGATCATCATCTTGAGGCATTGCAGTTGCCTGGTTGAGTGGAGGC980.10620312974121114No Hit
CTGTAAGGGGAGTTACCTGGAGGGGCAGGAGCCTGGTGAGTGCTGATGGGCC970.10511942433568859No Hit
GACTAAGGGAAATTAACTAAAGCCAAAATTTCCACTCCACAATTTCCCTAGT970.10511942433568859No Hit
TCTGCCTGGGATTTGAATAATTACTAATTATTTCTAAATGTGTAACAATAAT930.10078460271359833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)