FastQCFastQC Report
Sat 31 Dec 2022
SRR5848977.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848977.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91788
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT5100.5556281866910707No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC4940.5381967141674293No Hit
TAACGCGGGAGTTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCT1060.11548350546912452No Hit
CTGTAAGGGGAGTTACCTGGAGGGGCAGGAGCCTGGTGAGTGCTGATGGGCC1040.11330457140366933No Hit
CCGTTAGGGATCATCATCTTGAGGCATTGCAGTTGCCTGGTTGAGTGGAGGC1030.11221510437094175No Hit
TCGTCCGGGGTGAGTAGATAGATGGATGAAAGAATGGATGGGTGGGTGGATG1010.11003617030548657No Hit
CGCTTCGGGCGGTGCTTCTCAGATTCTCTCACAGTTTTGTGAAATTAAAACT1000.10894670327275897No Hit
TCTGCCTGGGATTTGAATAATTACTAATTATTTCTAAATGTGTAACAATAAT970.1056783021745762No Hit
GACTAAGGGAAATTAACTAAAGCCAAAATTTCCACTCCACAATTTCCCTAGT950.10349936810912103No Hit
GGCAATGGGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCA940.10240990107639343No Hit
GAGGCGGGAGAATGGAGTGAACTCGGGAAGCGGAGCTTGCAGTGAGCCGAGA940.10240990107639343No Hit
TACCATGGGTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC930.10132043404366585No Hit
ACGTATGGGGGACGCTCTTCCGATCTAAAGTAGGGAAAGCAACAGCAGAATT930.10132043404366585No Hit
ACAACAGGGCATCACTTCTATGGCATTCTTGCCAAATGAATAACCTTAGACT920.10023096701093825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)