FastQCFastQC Report
Sat 31 Dec 2022
SRR5848976.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848976.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91616
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT4930.5381156129933635No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC4620.5042787286063569No Hit
CCGTTAGGGATCATCATCTTGAGGCATTGCAGTTGCCTGGTTGAGTGGAGGC1200.1309814879497031No Hit
ACAACAGGGCATCACTTCTATGGCATTCTTGCCAAATGAATAACCTTAGACT1070.11679182675515193No Hit
TCGTCCGGGGTGAGTAGATAGATGGATGAAAGAATGGATGGGTGGGTGGATG1010.1102427523576668No Hit
CTGTAAGGGGAGTTACCTGGAGGGGCAGGAGCCTGGTGAGTGCTGATGGGCC1000.10915123995808593No Hit
TTGCTCGGGGGAACAGGCAAAACTTTTACCATGGAAGGTGTTCGAGCTATTC980.1069682151589242No Hit
CGCTTCGGGCGGTGCTTCTCAGATTCTCTCACAGTTTTGTGAAATTAAAACT950.10369367796018163No Hit
TTCAGCCGGGGCAGAAAAATAGAAGCTTCCATTTCTTGAGATGGGAGAAGAT950.10369367796018163No Hit
AGTACGGGACTACACAAGCCGCCAACTCAACTGAGAGCTAAAGAGACTAGAA930.1015106531610199No Hit
AAGCTTGGGCAGGTTACTGATCATCTCTAAGTCTTTGATTCTTGTTCTGTAA920.10041914076143905No Hit
CGTCAAAGGATTTAATCCCGACGAGCGGATTCAGAGCCGTGCTTATATAAAG920.10041914076143905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)