FastQCFastQC Report
Sat 31 Dec 2022
SRR5848953.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848953.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96246
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC6390.6639236955302039No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT4930.5122290796500634No Hit
CATTAAGGGCTAATATTTCAGCTGTTGAAACAGAAGAAGTTGAGCCTGATGA1690.1755917129023544No Hit
GTATCTGGGATTTCCGAGATGTGGAGGCAGAGCCACCCATCCATCCTCCCGT1630.16935768759221162No Hit
CTGAATGGGATAATAGATGTACAAGGAAATGCATTTTCTGCCTCCACCCCCT1620.1683186833738545No Hit
TTTGTCGGGCTGCTTCTGAAATAGAGAACTGCTATGATCTTCTGGTCAGAAA1580.164162666500426No Hit
TGACACGGGGAATGAATCTGAGCTTGGTTTCCTTTATTGCTTCCTCTGCAAT1540.16000664962699748No Hit
AAACTCGGGGAAAGGGGAATTATATGCTTAAGAAAAAGTAGGACACGGTTGA1530.15896764540864036No Hit
CAAACAGGGATGGAGGTGGCGAACGCTGTGCGCGCCTCCGACCCTGCCGCCT1520.15792864119028324No Hit
CCGATTGGGATATTTCAAGAAAAAGAAATTATGTTAAATAGCCCTGTTTTAA1510.1568896369719261No Hit
CATACAGGGATAGGGACTAATATTTCTTTTTCTTTTTTTTAAAAAAAACATT1500.15585063275356897No Hit
ATTTCCGGGAATGGTAGGCACTGTGATCATGATGAAAATGAATGAGGATGGC1480.15377262431685473No Hit
TTATGAGGGATATTAAGACTGTAGCTGAATTGCACATGAAATCAGATTGCCA1470.1527336200984976No Hit
GACTACGGGGAAGTCCCTGTTATCGAATACAGATACTTTAACAAGCAGACAA1460.15169461588014047No Hit
TTTACCGGGATCAATAAAATACAAATAATCCAATTAAAAATAGGCAAAGGAT1450.15065561166178335No Hit
CTAGGTAGGCAACTAAGATTGGTAGAGCAAGGGAAAAATCTCAGCTGCTTGT1440.14961660744342622No Hit
TGCACTGGGTTATATTCTCACTATCTGTAAATGAACATTTCTGTTGCTCCAC1440.14961660744342622No Hit
TCAACAGGGAAGAGCCAGCAGGAGCAGCGTGGTCATTGCTGGGTGCTATTAC1410.14649959478835484No Hit
CGCACTGGGACATGTAGCAGTAAAAATAGTTAAAAATGTGGATAGATACTGT1400.14546059056999772No Hit
GCTATGGGGCAAATCAATAAACGTAATCCATCACATAAACAGAACCAAAGAC1400.14546059056999772No Hit
GCTGCTGGGATTGAGAAGTTCCATCAGAGTTGGAGATTCAGAGGAAGGAAGA1390.1444215863516406No Hit
GAAAAAGGGAAGAGTGAAGCAGTTAGAGTCTGCAGCCCTGGAATGTCTGGGT1380.14338258213328345No Hit
TGCCTGGCTAGTTTTTTTTGTATTTTTTAGTGGAGACGGGGTTTCGCCGTGT1370.14234357791492633No Hit
ATTTAGGGGGAGACCGGAAGTGAGTGATCGAAAGCATGGCGTCGGTGGTGTT1340.13922656525985497No Hit
ACTTCAGGGGGGCTTTTAAACAAAGTTACCATGCCAGAAGTGTTCTTGGCAT1340.13922656525985497No Hit
AATGTTGGGCGATCTTAGACGGGGAAAGTACATAAATGCCTTTTTACAGCTT1330.13818756104149782No Hit
GACTTAGGGGGTTTATTCTCAGGTAATAATTTGGGAAGTGTAAGAAAATATG1320.1371485568231407No Hit
CCACATGGGGTTTGGGAGAAAGTAAGAGAAAAGAACTAGGGTCTCTGCCTGG1320.1371485568231407No Hit
CAGGAGGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAACA1320.1371485568231407No Hit
ATGTATGGGAGTGTACAATTTGGTAGTTTTTTATATATTCACAAGGTTGTAC1320.1371485568231407No Hit
GAGCATGGGACGTGGGTGGTCCTGGGGCACTCAGAGAGAAGGCATGTCTTTG1300.13507054838642643No Hit
GCTTCGGGGCACAGTGACAAAGGAAAAGTGGTGCCGTTATGCAATCCATTTA1300.13507054838642643No Hit
TAACTAGGGCATCGAAAAACTTGAGAGTAAGGTATATTTGGGGAGAATATGG1300.13507054838642643No Hit
CGCCAGGGATTGAGTTGAGAAACTGAGTTCTGCTGTGAACTTCAGGATCTTT1280.13299253994971222No Hit
CATAAGGGGGTTGGCCAGGCTGGTCTCGAACTCTTCACCTCAAGTGATTCAC1280.13299253994971222No Hit
TCTCCGGGTCAGGAGTGCCTCACGTAGATAGATTGAGGTTTTATAATAATCA1280.13299253994971222No Hit
TAATCAGGGGACTTTAGCATGTAAAATCTTACATTTTTCTTGCCTTGGGAAA1280.13299253994971222No Hit
ACACGCGGGATAGAATGTTTGTATGCTCTAAGACTAACTTTTAGATTTTCTT1280.13299253994971222No Hit
TAAAATGGGACTGTGCCTGAGCTCTGGAGTGCCAAGGCCTACCCATCGCTCA1270.13195353573135507No Hit
TATGCAGGGAGGAAATGAATATATGTGAGTTCTAGCATTTCTCCCCACCCCC1260.13091453151299795No Hit
AAACACGGGGGGTTCGGTATTTTCTAACTGAAACTTGGCACTGCCATCAGTT1260.13091453151299795No Hit
TCATTTGGGGCATATGGGAAGTAACATTGCACTAATATGGAAATCACTGCCA1260.13091453151299795No Hit
GCCGCCGGGTCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGA1250.1298755272946408No Hit
TAACTGGGGGTGCTCTAAAACTCTTCTACTTGGTGAGCATCTTGATTGGTTA1250.1298755272946408No Hit
ATGCTGGGGGGAAGCGGTTGCAATCTGGATTCAGCCCGATTCCGTTACCTAA1250.1298755272946408No Hit
GATCTTGGGCAAAAAATCCTTGGAGTGCTTGCCTTTCCACGTGACTTTTAAA1230.12779751885792656No Hit
ATTTAAGGGGCTGCCGTGTCCTGACTTCTGGAATCTTTGAGACCAAGTTCCA1230.12779751885792656No Hit
TTGCGTGGGATACAAACAGACAAAAAATAAAACAAAACTTGAGTTCTATTTA1220.12675851463956944No Hit
GGTGGTGGGACGGATGAGAGACTGGCTCAAGAATATCCTCATGCAGCTTTAT1220.12675851463956944No Hit
GGCAGGGGATATTCTAAATCTACCACCTTAGAAAATTCTAAAAAACACAAGA1220.12675851463956944No Hit
AGCCGTGGGTCCTCCCTCCTACCCTGGCACGTGGAATAGGGCTTACTCACCC1210.12571951042121232No Hit
TATCAAGGGAATCCGCCTCCAGGTAACTCGCTAATTTCCAGTGTTAAGGTGT1210.12571951042121232No Hit
TCATCAGGGATATGTGACTTTTTCATTTCTTTTAACAGGAAAAAATTAAAGA1210.12571951042121232No Hit
GATATTGGGGACACCATTCTCTCTCCATTTACTTCTGGTGGTTACCCTGACT1210.12571951042121232No Hit
AAGCTGGGAAGCAGATCTGGGTTGCAAACCTGCCTCTACTGCTTTACTATTC1210.12571951042121232No Hit
TCGTTAGGGACAGATAAATGAATTTTCACAAACTCAGTGCACACATGTGTTT1200.12468050620285519No Hit
ACTGCTGGGAAGAGTGGACAGCGGGGATCTTCCAAGTCTGGAAAGTTGAAAG1200.12468050620285519No Hit
CAGGGGATACTATGCATTTAGAAATAACTCAAACAACTCAAGTTTATCACTA1190.12364150198449805No Hit
GCAACGGGGCCAAAAAAGAATCTGCTTAGATTGCTAAGGTTAGAGGTAAAAA1190.12364150198449805No Hit
GCTCGTGGGAATGGCTGCCCCGAGGAAGACAACAAAGAAGCCAGTGCCCTGG1190.12364150198449805No Hit
TCGAAGTGGGGGCCATCTAAAAATGAGAATTATAATTATATGAATTATAATT1190.12364150198449805No Hit
CTCTTAGGGCAAATGAGGTAGAGCTCACCTGTGCTCACCAGCTCCGTCAGGG1180.12260249776614093No Hit
TTCAAAGGGCGGCTGCCCCGTCTGGGAAGTGAGGAGTGCCTCTGCCCGGCCG1180.12260249776614093No Hit
ATAATGGGGGACGCTCTTCCGATCTGGACCTGGGGTGCATTCAAGACAGATA1180.12260249776614093No Hit
TCAATGGGTTTTGGAGTCGTAGGAGTTACATCTGCTAACATGCTTATTTTCA1180.12260249776614093No Hit
CAAGCTGGGACATGAAATAAAGGTATTATCCTCTACTCATAAAGAAATACCA1170.12156349354778381No Hit
TCTCAGGGGGCTTCCCAACATGGCGCAGTCTATTAACATCACGGAGCTGAAT1170.12156349354778381No Hit
TACACCGGGGGTTCTAAAAATTGGTAATATTCAATAGTGGTTTTTTGTTCAG1170.12156349354778381No Hit
TACACTGGGGAGACATAAAGTGGATATTGGCTTCAGGGGTGTTCAACATTAA1170.12156349354778381No Hit
CCGACAGGGCAAGTAACTATCACAAGAACCACTGTCCCAAGATCCAAAGTCA1160.12052448932942668No Hit
TTTATGGGGATTGGACCAAATTTGGTGTTTGTTTTCACCTTGACGCTCTTCT1160.12052448932942668No Hit
AAACACGGGATGAATGTTGGGTTTCTTTGTACTTGTTAAGCCACATTTGAGG1160.12052448932942668No Hit
TCACAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA1160.12052448932942668No Hit
ATGCGCGGGGCTTGGGACAGACCATAAATGATGGAAAATGTCAACACAAAAA1150.11948548511106956No Hit
TCGCCAGGGGAAATTTTCCTAATTGGGCCTTTTAAAAACATGGCTGGGTGGA1150.11948548511106956No Hit
CAGATTGGGAGTTTGCATTTTTTGGTGTTCATTTTCATTCTGTTGATTTCTC1150.11948548511106956No Hit
CACAGAGGGTTAATTGATCTCATGTTAGCAAAATAACTAAATTTGCTCGTCA1150.11948548511106956No Hit
ATGTTAGGGATGTTTTTCTAAGGAAACTTTCCACAGAATTTTAAACAACTGA1150.11948548511106956No Hit
ATATATGGGCAATTACCTAACCACTAAACAGAAAGGCCACCTTCACTCTTTG1150.11948548511106956No Hit
TAGCATAGGGGTAACCTCAAGCATAGGCAACATTTTCCTATTTCATGTTATT1140.11844648089271241No Hit
AGCAATGGGGTGGTGAAAGAGTCCAGGAGCTCCTTTAGAGATTGTCAAGTCC1140.11844648089271241No Hit
CGGTATGGGAACTTAAAAGATGCCACCTCTAAGGTAGCGCTGGTATATGGTC1140.11844648089271241No Hit
GTTACTGGGATACATACTTTGATTCTTTAGTTACATAATTGATAACAAAGTG1140.11844648089271241No Hit
TAGTCAGGGATAGGGCAGAAAGGCCATTCCCTGAGGAAGATCCTGGACCTGA1130.1174074766743553No Hit
GGGTATGGGGACCCACTGGAATTTCTATAAGGCTGGTACCCTTCCCAGAGTT1130.1174074766743553No Hit
TTCGCCGGGGGTGGTTGGTGTGCGGGTTTCGGTTGGAGGACTCGTTGGGGAG1130.1174074766743553No Hit
TAGCTGGGGGATCTTCTGTAGGGGTGTGTTCCAAGTTTCCAAACAACAGAAA1120.11636847245599818No Hit
ACTAATGGGACTCAGTGATAAATGAATCTCTGAAAACAAATGCTTTTACATT1120.11636847245599818No Hit
TACAGCGGGAGATGCTAGATTTGAAGAAAACCTGGGTTTTATTGCATAGATT1120.11636847245599818No Hit
CGCAACGGGATCACTACCTTTTATTTTGGCCACTCTGATAGGTGTGCAGGTG1120.11636847245599818No Hit
TACTATGGGACCTCTTTCAGGTTTTAATTCAGTTACCACCTTCTTGGTAAAA1120.11636847245599818No Hit
CAGTACGGGATGAAATGAGCAAAAATTATTGAAAGTCAAAACTAACTAAAAT1120.11636847245599818No Hit
GCACGCGGGGGGCTCAAACGTAGGCGTCTGTGTTTCGCAAAAGTTGGAGACG1120.11636847245599818No Hit
AAACCAGGGATGCCCCTTCTGACACCAGCTCCCTGTGGAGGCCTGGTTTCTG1110.11532946823764104No Hit
TTTACCGGGATGATCTGAAAACCCAGTGGATGGCTGAAGGTGTTAAATGTGC1110.11532946823764104No Hit
GGGCTGGGGGAAGACTTACTGCTGAGCACATTGGCCTTTTAATACAGATGCC1110.11532946823764104No Hit
TTGTGAGGGCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATC1110.11532946823764104No Hit
TCAATGGGGCGGTTTTGGTTATGCAGCCCTCGTGACATTTGGAAGCATTTTT1110.11532946823764104No Hit
TAGGCACGGGAAGCATTCTAGTATTTGTGCAAGGACATAGAAACACACAGTG1100.11429046401928392No Hit
TTAAAAGGGGGATATTGTGAGTTAATACTTTAGAAAAAAATCCATCAACTCA1100.11429046401928392No Hit
TGCCTTGGGCACAATGTGAGACAGCAACCATTTCCTTCCCAGGATATCATAG1090.1132514598009268No Hit
CTAATGGGAGTTGCTGGTTTCATAACCTTGAACAAGTTACTTAACTTCTCTG1080.11221245558256966No Hit
GGTCACGGGTAAGGTGACTCAAGATGATACACCGAGAGAAAAATGCAAAATA1080.11221245558256966No Hit
AAAGCTGGGATCTGACATGGGGAGTTGTAATTGTTCATATAGGAAGGAAATC1080.11221245558256966No Hit
AGTAAAGGGATTGTCAGTTAACTGATTTTCAACAAGGATGCCAAGACAAAAA1080.11221245558256966No Hit
TGCGTTAGGGAAGCTTTGATATGTGAATATACCATCACCACAATCAAAATAA1080.11221245558256966No Hit
ACTCTCGGGTTGGCATCTCATTTTTGGGACCTCCCATCTTTCTGTTTTGAAA1070.11117345136421254No Hit
TTCTAGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1070.11117345136421254No Hit
GCGTTGGGGCAAGTCATGGACCACATAATCTTTTCCCCCACTGGCAAAGTGA1070.11117345136421254No Hit
ATACTTGGGAGAGCTAACTGATAAGAGTGGAGGAGGAATGCCTTCTCCTAAG1070.11117345136421254No Hit
GGCAATGGGCAGGGGCATGCCAATTGCGTAAAGTGAGGCTCGCCTGCATAGC1070.11117345136421254No Hit
ATTGTAGGGTAGTTCTTGATGGTTTTCTTCCTTATTAACAGTTGGTGTTTCT1070.11117345136421254No Hit
GTGAACAGGGTAATGGATAAAGGTATACCTCAGACTTCACTGTGCTCACAAA1060.11013444714585541No Hit
TTCGCAGGGATGGAATTAGATGACACTTTAAAATATTCCTTCCTTCAATTTG1060.11013444714585541No Hit
CACTGGGATCTTCAGGTTGATATCACAATCACTTTTCTTACTTTCTGTCCAT1060.11013444714585541No Hit
GATTCTGGGTCTCTTAAAATACAATTGCCTCTGGGTGTGTGTAGGGGTGAGA1060.11013444714585541No Hit
TGTTAAGGGATGGAAGTCATGAAATACTCCCTGCACAGATTTGTGTGAGCTT1060.11013444714585541No Hit
TTAACAGGGAGATAGCAAAGTGGGGAATAAAAGTCTAACTACAAGCTTATTA1060.11013444714585541No Hit
GTAGAGGGGCAAGACTGGATGATTGACTTCTATCAGTCAGTAGACAAGGAAG1050.10909544292749829No Hit
GTACAGGGGAGATTAAAATTTATATTACACATCCTTTCATGCCCCTCAGAAA1050.10909544292749829No Hit
ATAGGCGGGATGACTTCTACTCTTCCTTAGATATCCTCCAAATGACAAAGAG1050.10909544292749829No Hit
CATTTTGGGTGACTCCAAAGGTTACGGAGTGGGAACACCTATTGGTTCTCCT1040.10805643870914117No Hit
GCTGCCGGGGGGAACATATGTGAGAGGAGAGGTTCAAATTTTTGGCTGGTGT1040.10805643870914117No Hit
GCACAGGGGAGGAACCACCAGCTGCTGCATCCCATGGCCAGGGGTGGCGTCC1040.10805643870914117No Hit
GATTTCGGGATTTTTAGAGATTAATTTGTGTAGATTGTGTAAATTCCTGTTG1040.10805643870914117No Hit
GCAAAAGGGTAAAAGTCAGCATTTAATATACAGTGTTTGGTTTGGAAACCAT1040.10805643870914117No Hit
TCGAAAGGGACAGTAATAGATTATGAAGGATGAATTATTTGAAAGCTATTTT1040.10805643870914117No Hit
GCGTTTGGGAGGGTGTGTTCACATATATCTCAGTTGAATGTCACAAGAATCC1040.10805643870914117No Hit
AGTGGTGGGACTGCTTACAAAACAGGGTCACCAGTGCATTATGTGGCGTGTT1040.10805643870914117No Hit
ATTCCGGGTATTGAACCCTGAACACAAAGTACACATATATACCCTGCATCTA1040.10805643870914117No Hit
ACTAGTGGGTTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCCTATCGT1040.10805643870914117No Hit
GCTTTTGGGATTTATGCATTTGTAGGTACTATTTTTCTAGTAAGAAGTGGAA1030.10701743449078402No Hit
ATTCCTGGGCACTTTGGGAAGTTATTTCTTTATTTTAATGATGTATCATTGT1030.10701743449078402No Hit
TCGCACGGGACTTTCTTCACTGTCCCTATTCCTAGACCTGGGGCTTGAGCTG1030.10701743449078402No Hit
GTTTTTGGGGAGGCGGCGAAGATGGCGGAGAACAGCGGTCGCGCCGGCAAGA1020.10597843027242691No Hit
ATTCCCGGGTATTTTATGGAGTATATGTAATAAGAAGTAGCTTCTCAGTGAA1020.10597843027242691No Hit
CTATTGTAGGGAGTGCTGTTTCACTGTGGTCAGAGACTGTGCTCTGCGTGGG1020.10597843027242691No Hit
TAGGCCAGGGAATGAACAGCAGTTAGCCAGACTGACGGATTATGTGGCTTTC1020.10597843027242691No Hit
TGTTGGGGGGCATTAGACCATGGTTGATGCAACAGGGGACATGTCCAACGTG1020.10597843027242691No Hit
GTTGCAGGGCAGGGCTCATGAGGGGCTTGAACCCATGTCGTGTGTCTCTACC1020.10597843027242691No Hit
GCATGGGGGTCTCTCCCCCTAACCCCAGATGAATTATTGTATTCATTCCAAA1020.10597843027242691No Hit
AACACGGGGGATTTACATTTTGATAGCCATTGATGTATGCATCTCTTGGCTG1010.10493942605406979No Hit
CTCCTTGGGATTGAACAAATGACAAGGCACAAATACTTTCAGAATTGTATTT1010.10493942605406979No Hit
GCGCTAGGGACGGTTAAAACAAAGAAAATGTTGTCAACGTTGACGCCAACAT1010.10493942605406979No Hit
TCGGTGGGTATATACAGATACTTTCATGGTCATTTTGTATGTATGTTAAAGT1000.10390042183571264No Hit
TGTGATGGGGGATGGAGATCCCTGGTTGTTAGAAGGAGGAAAAGAGATTTTG1000.10390042183571264No Hit
ACTATCGGGAGTGATGGAAGGCGGTTATAATGGATGGTGGTGTGTACAAGAT1000.10390042183571264No Hit
TACGCAGGGGACTCTAACATCTAAATGGAACCACTCCTCTTCCAACACCAGA990.10286141761735552No Hit
GCACCAGGGGAATATCAAGAGGAGGAGTTGTTGGTAATGTGTCATTGTTTGT990.10286141761735552No Hit
TCTCCAGGGGTCCTTGAGAAGCATTAAGAGGTAGGGAGTGAAACAGGTGAGG990.10286141761735552No Hit
AGAGCGGGTAGCTGGGACTACAGGCAAACACAAACACACAGCTAATTTTTCT990.10286141761735552No Hit
TCTAGGGGGATCTGCCAGTGCTTTCTTCAAGTCACCCTTGCCCCGATTCCTC990.10286141761735552No Hit
AACTATGGGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCAACATAAC980.10182241339899839No Hit
TAACAAAGGGGATGAAAATGTTTTTGTGAAGTACTTGTAACTAAATTCCTAC980.10182241339899839No Hit
TCATAAGGGATGGGATTTAATGGGAAAAATATGTAAAAACTGTCACTAGTCA980.10182241339899839No Hit
GTCAGGGGGAGAGCACTCAGACTTTCTCCATATCAGCGACAGGCTGTTTTGC980.10182241339899839No Hit
GAAAAAGGGATTATAATTAGCATAAATTATTTGCACCTTAATAAGTCCTCAG980.10182241339899839No Hit
CGCTTCGGGGTCATTCAGAATTGTCTCTATCCTCCTAAAGAAGGTGAAAGAG980.10182241339899839No Hit
GATAATGGGGCACTGTTTCTTTTTGCATATAAGCATAAGTAACTTCTCTCAG980.10182241339899839No Hit
AGACATGGGTAAGACCTAATTTGATCTTCATGACAACTGCATAAAATAGTTA970.10078340918064127No Hit
TTCTGGTGGGGGAATTTGAAGCCCTGACAAAGAGAAGGCAAAATCAGTTTGT970.10078340918064127No Hit
TGCCTGGGGTCCATTCCATGCAGAACCACAGCCATTTCCCCAGGCAGTGTTG970.10078340918064127No Hit
AATGCAGGGACTTAAAGTAGTTCTAGTAAACATGTCCTAGAAAACAGTTGCT970.10078340918064127No Hit
TTATACGGGGGGCCACAGGGCAGGAAAACTCAGTGTTGCTAGGAACTGCCAG970.10078340918064127No Hit
TCCACAGGGTGGAAACAATATTCTCACATTAGATACTAAATGGTTTATACTG970.10078340918064127No Hit

[OK]Adapter Content

Adapter graph