FastQCFastQC Report
Sat 31 Dec 2022
SRR5848945.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848945.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91854
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC3770.41043394952859974No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT3350.364709212445838No Hit
AGTTGAGGGCAATATGATAGAATTGAAATGCTAAAGAACTATAAGGAAGGCC1670.18181026411479087No Hit
TCCAAAGGGGAGGATTTGCATTCTAGGTGTATAATTTTTGGAGGAATGTTTA1600.17418947460099724No Hit
AAGCAGGGGAATCTTAAGTTCTGGGATACATGTGCAGAACATGCAGGTTTGT1320.14370631654582272No Hit
TCCAATGGGTAAACTGAGTATTATTAAAATGCTGTTACCTAGAAGAACCTCT1210.13173079016700415No Hit
AATCGAGGGGCAAGTGAAAAGGGTGGGTCCCTCATAGGCTAGAATGTGCAGC1150.12519868486946675No Hit
GTTTGTGGGATAGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTG1020.11104579005813574No Hit
CTACGTGGGGTAATACTACATTACAATTTTAAAACCATTTTAAAATAAAAAT960.10451368476059833No Hit
CAACTTGGGGAATTAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGT930.10124763211182965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)