FastQCFastQC Report
Sat 31 Dec 2022
SRR5848944.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848944.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91115
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT3590.3940075728475004No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC3590.3940075728475004No Hit
TCCAAAGGGGAGGATTTGCATTCTAGGTGTATAATTTTTGGAGGAATGTTTA1720.188772430445042No Hit
AGTTGAGGGCAATATGATAGAATTGAAATGCTAAAGAACTATAAGGAAGGCC1700.18657740218405314No Hit
AAGCAGGGGAATCTTAAGTTCTGGGATACATGTGCAGAACATGCAGGTTTGT1290.1415793228337815No Hit
CTACGTGGGGTAATACTACATTACAATTTTAAAACCATTTTAAAATAAAAAT1120.12292158261537618No Hit
GGCTGTGGGGATCCTGACCACGGGTAGGCTTAGGTTTATGTGTGTGTATGTG970.10645887065795971No Hit
CAACTTGGGGAATTAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGT960.1053613565274653No Hit
TAACAAGGGATCTTCGGCAGGGGATCTAGGTAAGGGCGATCTTTCATGGGGG930.102068814135982No Hit
TCCAATGGGTAAACTGAGTATTATTAAAATGCTGTTACCTAGAAGAACCTCT930.102068814135982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)