FastQCFastQC Report
Sat 31 Dec 2022
SRR5848936.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848936.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111035
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT6850.6169225919755033No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC6610.5953077858332958No Hit
GTCGAGGGGGACCATGACAGTCTAAAAAGGAGCCAATCCAGAGACCTAAAAG1680.15130364299545188No Hit
ATTGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1290.11617958301436485No Hit
TCAAACGGGATTGTGACAAGTGACACCTTTGGGAAAAAAACAATACAAAACA1220.10987526455622101No Hit
GCTCCTGGGGTGGCAGAACCATGGCAACCCATGGCAGAAATTCCTAAAGCTC1200.10807403071103705No Hit
CTCGAGGGCACTTGCAGTTCCCCAAATAAGCCTCTGTGTTCCTTCTGCCTTT1190.10717341378844508No Hit
CTAGCTGGACTGCATTATAAATTCTGTACTGCCAGAACTATGCATTGATACC1180.1062727968658531No Hit
TACAATGGGTGGAAAAGAGACAGAAAGTATCTGTTTTGCTTCTAACTCTGCC1160.10447156302066916No Hit
TGCTACGGGACTGAACTCTATGTAGGGGGGGTGGTTTTGCCTCCATTAGAAA1130.10176971225289322No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)