FastQCFastQC Report
Sat 31 Dec 2022
SRR5848935.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848935.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110025
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC7210.6553056123608271No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT6730.6116791638264031No Hit
GTCGAGGGGGACCATGACAGTCTAAAAAGGAGCCAATCCAGAGACCTAAAAG1710.15541922290388546No Hit
GCTCCTGGGGTGGCAGAACCATGGCAACCCATGGCAGAAATTCCTAAAGCTC1340.12179050215860032No Hit
ATTGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1320.11997273346966597No Hit
CTAGCTGGACTGCATTATAAATTCTGTACTGCCAGAACTATGCATTGATACC1300.11815496478073165No Hit
AGATGCGGGTCATCATATAATTATTTGCATATTAACTTGAGGGTCTTTTTAT1250.11361054305839581No Hit
TGTTTGGGGGCAGGTTGTTCATTTTCCATGTAGTTGAGTGGTTTTGAGTGAG1130.10270393092478981No Hit
ATCATGGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1130.10270393092478981No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)