FastQCFastQC Report
Sat 31 Dec 2022
SRR5848934.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848934.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108088
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT7430.6874028569313893No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC7360.6809266523573385No Hit
GTCGAGGGGGACCATGACAGTCTAAAAAGGAGCCAATCCAGAGACCTAAAAG1420.13137443564502999No Hit
ATTGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1380.12767374731700096No Hit
TAGCAAGGGTAGATTTCCCCAGTGAAGCCATCTGAGCACGGGCTTGTCTTTG1200.1110206498408704No Hit
GCTCCTGGGGTGGCAGAACCATGGCAACCCATGGCAGAAATTCCTAAAGCTC1200.1110206498408704No Hit
TGTAATGGGGAATTAGCTGGTGATGCTTCCCAGAATTACCTTGCTTCAGATC1120.10361927318481237No Hit
TACAATGGGTGGAAAAGAGACAGAAAGTATCTGTTTTGCTTCTAACTCTGCC1090.10084375693879062No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAAACTCGTATGC1090.10084375693879062No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)