FastQCFastQC Report
Sat 31 Dec 2022
SRR5848923.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848923.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192984
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC9310.482423413339966No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT8590.44511462090121456No Hit
GAACATGGGCATCGGAGAATCTAGCAGCAGTAGCATGTTACCAGTCTCTCTT2080.10778095593417071No Hit
TCAGTTGGGGTTGTTTATGATAAGAAATCCAAGTTTGATTCCTTCTGCTTGA2020.10467188989760809No Hit
TTCACTGGGGGCCATAGGTGCCACCAGAGTTGACGGGGAGATAATTATAAGA1990.1031173568793268No Hit
TGTAGAGGGTGCATTTTTCCGGTATATTGATTGGGAGAAACTTGAACGCAAA1970.10208100153380592No Hit
CAAATACGGGATATTTAAAATGCTGATACAAAACCATTCCATGCAAAATGTT1960.10156282386104547No Hit
TATCGCGGGGAAGTTAAAAACTAACAACATGTAAGAAACAAATTAGACAAAT1950.10104464618828504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)