FastQCFastQC Report
Sat 31 Dec 2022
SRR5848922.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848922.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192651
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC8800.45678454822450965No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT8150.42304478045792654No Hit
TATTCCGGGTCCTTCATGGTATTTAGACTTCCTGGGTTATTTCCCAATCCAG1980.10277652335051465No Hit
TATCGCGGGGAAGTTAAAAACTAACAACATGTAAGAAACAAATTAGACAAAT1970.10225745000025954No Hit
AATTCAGGGAGTTCCTATGTTGTCAAAACTATTTTCATAGTAATACAAAGGT1950.10121930329974929No Hit
TAGCCTGGGGGACAGAGCGAGACTGTCTCAAAAACAAACAAACAAACAAACA1930.10018115659923904No Hit
TCAGTTGGGGTTGTTTATGATAAGAAATCCAAGTTTGATTCCTTCTGCTTGA1930.10018115659923904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)