FastQCFastQC Report
Sat 31 Dec 2022
SRR5848915.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848915.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140610
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC7390.5255671716094161No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT7200.512054619159377No Hit
AGTACAGGGATCTCACAAATTTAAAATTTTCACTTCATATTTTTAATTCATC1730.12303534599246142No Hit
AGATTCGGGGATTTTTATGGTTGGAACCAAAGTTATTCAAATAGTAAAAGGA1640.1166346632529692No Hit
TCGCCAGGTGGTTGCAGCTGAGCTTGTATAGCTTACAGAACCAAACAATATT1550.11023398051347699No Hit
CAGCACGGGCAAGCCAACTGTGTAGCATGGACTCGAAAGCAAATATTGTACA1530.10881160657136761No Hit
TGTTGCGGGGTCTTGTATCTGTTCAGCAGGTCTGAAAGTAGTTGATGAAAAT1500.10667804565820355No Hit
GTCTAGGGGCAGGACACGGGTCGCTGGCGGGTTAGGTGGCTGCGTGGCCGCC1480.10525567171609417No Hit
ATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCC1480.10525567171609417No Hit
GCTTTCGGGAGATCTTGCCCTCAAAGAGTTTATAGTCTACTGGAGAAAGGGT1470.10454448474503948No Hit
ACACAAGGGGACCAACTGACTGACTACAGTGTGCCTGGACTGGATGCTAAGT1430.1016997368608207No Hit
AAACTAGGGAAATAAGCTGGATTTTTATAGTAATAAAATTACTAGCTTCAAC1430.1016997368608207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)