FastQCFastQC Report
Sat 31 Dec 2022
SRR5848913.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848913.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139355
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT7630.5475225144415342No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC6610.4743281547127839No Hit
AGTACAGGGATCTCACAAATTTAAAATTTTCACTTCATATTTTTAATTCATC1670.11983782426177747No Hit
AGCTTTGGGCAAATAGAAATGTATTTTATAAAAACTTGTTGGTGTGAAATAG1510.10835635606903232No Hit
GAGGCTGGGAGCCCCTGCTGCTTCCCCCGTCTCCGCCTGGGGGAGCCCACCG1510.10835635606903232No Hit
GGCACTGGGAGTCTGACACTCCATTAACAAAGGGCTGCTTGTGTGCCATAAT1490.10692117254493917No Hit
GTAAACGGGTCCGATCTGCTCTGGGACAATAACAAAATTTCTAAGATTTCTA1470.10548598902084604No Hit
CCTTGGGGGAATCCCAGCACTTTGGGAGGTTGAGGCAGGAGGATCACTTGAG1470.10548598902084604No Hit
AAAAGGGGGGAAAGGACTGTTTATACAAATATAAATATTTTAGTAAAATTTA1460.10476839725879947No Hit
GCTTTCGGGAGATCTTGCCCTCAAAGAGTTTATAGTCTACTGGAGAAAGGGT1460.10476839725879947No Hit
GCATCAGGGTATGATCAGAAAACAGAAGCTTTTGAACCAAACATTTATACTA1460.10476839725879947No Hit
TTGTTAGGGTGACTGCAGTAGAGCTTCTTAGTGAGCAGTCTATGTTGGAGTG1450.10405080549675289No Hit
GGCTGGGATCAACTGCTATGACGGTTAAGAATGTCAGTATACAAGAAGGAAT1450.10405080549675289No Hit
AGATTCGGGGATTTTTATGGTTGGAACCAAAGTTATTCAAATAGTAAAAGGA1430.10261562197265975No Hit
GTAACGGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC1410.1011804384485666No Hit
TTTGTTAGGGACATGGGAGAATTTTAAAACATGCGCTTTTAGAATCAAAATT1400.10046284668652004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)