FastQCFastQC Report
Sat 31 Dec 2022
SRR5848908.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848908.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121141
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC8440.6967087938848119No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT6960.5745371096490866No Hit
TGATTAGGGAGATCAGATCAAGCTACAGCTCTACAACCAGCAGCACCGGGCT1720.14198330870638348No Hit
CGTTATGGGAAGAATATGCATCTTTATTGTCTTACCAATGATTAATATTTTT1710.14115782435343938No Hit
ACATAGGGGTTTTGCAGGGCCAAGATAATCTTGATTTCACAACCTGAAAAAT1700.1403323400004953No Hit
GCAAGAAACAAGTCAACGTCAAGATATTTGGGAATGATTTCAAGAGACTTTG1680.13868137129460711No Hit
GCTACAGGGTAGATGGGTGAAAAAAGAATGAGGTTCAAGGGAGCGTGCACCA1630.13455394952988667No Hit
TGTCATGGGCAGGGCATTGAGCTCAAAAGACAGAAAGAGGCAATTTATGTGT1620.13372846517694256No Hit
TGTGTTGGGATGCTTGCAAACAAATTTTCATGTCCAGTTTGTGCTCACCCAT1560.128775559059278No Hit
GGTTGTGGGGGCGCGCCAAGGCGTCAGTCGAGGAGTCAAGGCAGCAATGAAT1560.128775559059278No Hit
GTTGCTGGGTGTGCCAAACTAAATAAAAGGCAATGGGCCATTGCGTTTGGGT1550.12795007470633393No Hit
GGTGCTGGGACGAGGGGTTTGGCCGCAAGCAGCACAAGGAGCTCTGGGCCCA1550.12795007470633393No Hit
CAGCTTGGGGGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGAT1530.12629910600044575No Hit
CAACTGGGGACTGGCGGGAAGGAGAAATTTTTATTCCTGGGTTGCTGAAAGC1530.12629910600044575No Hit
CTACGTGGGGTGAGGGCCTACCTTGAGTCACCCCCAAGTATAAACTCAGATA1530.12629910600044575No Hit
GTCGAGGGGACTAAAAGACCTTCTGGATGAAGTAATTTTACTAATTTATTCC1490.12299716858866941No Hit
GTACCAGGGTCAGTATTTTCAAGGCTCTAACCCGCCTTCATCCAATGTGTGG1480.1221716842357253No Hit
GGGTATGGGGGTCCCCACAACCCTGGCGGAATACTGCATCAAAACTAAAGTG1480.1221716842357253No Hit
TTGGGTGGGGAACAGCTTTAGTCATGGAATACTGGGAGAAGGAATAACTTTC1480.1221716842357253No Hit
AAATATGGGCTGAGAAATGGTGCAGTTCTGAAGATAGATGGACAAAACCTGC1470.12134619988278122No Hit
AAATTAGGGCACAGCCATTGTATATTGAATCTGTCAATACTGAGCAAATAAA1470.12134619988278122No Hit
GATGGGAGAGGCTTCATACTGAGACCCAGATGGGGGAAAACAGCTTCCTCTC1450.11969523117689304No Hit
GACAGTGGGCTCTGCTCTAAAATTGGTGTTTGGGTGATCAGAAGCAGGTAGC1440.11886974682394896No Hit
CATATAGGGAAAGACAGTCTGTGTTGCAAAAGAAGCCCAAGGCTGAAGATTT1430.11804426247100486No Hit
TTGTGCGGGTACCACTAAAATTGATGAGAATTCTTGTCTCCATGTGTAATTT1420.11721877811806077No Hit
CTGGCTGGGGGGATGTTTCAAGAACAGTGAGTGAATTGGTTAGGCTGGAGTA1410.11639329376511669No Hit
GAAGCAGGGCGATCTTGGTCGGGGATGACCCCAATACGCAAAACTAACCCCC1410.11639329376511669No Hit
CTAATTGGGGGACTCATATAAATGATTTCTAGAGCGTTCCCAATTTCACATT1410.11639329376511669No Hit
GTACTGGGGCAGAATGTATTTGCTTAAGCCGGGTTTTATAGCTTGATTTTTC1410.11639329376511669No Hit
TTTTCTGGGGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACA1400.11556780941217258No Hit
GATCTCCGGGCTATTTTGAGTCTATAAGATATATTTCATTTTAGACATGCCT1390.1147423250592285No Hit
TAATAAGGGAAGTTTACATTCATTGTAATCTGTAGGTTCTTTGTCCTCATCC1380.1139168407062844No Hit
CACGGTGGGATGCAAATGGACACCAAAAACGAGCTGGGGTAGCAATTCTTAC1380.1139168407062844No Hit
TCACCAGGGAGGCGCCGAGAGGGCGGGCCAGGGCCGCACTCCGGAGACTCGC1370.11309135635334032No Hit
TTGGATGGGTATTTAATGGCAATGCAAAAGTCTTCCTGCTTCCGTGCTGAAC1370.11309135635334032No Hit
CAAATAGGGCAGCTCACTGCATCTCCGCCTCCCAGGTTCAAGCGATTCTCCT1370.11309135635334032No Hit
GTATCAGGGTGGACTCAAAGGTGAATGACACAGGCTCTGTTTGCTAAGCATT1360.11226587200039624No Hit
GGCCCAATGCTGAATATATAATTAGAATTTATTAAGTTGAATAAGTGAAGTT1360.11226587200039624No Hit
TGCTATGGGATTTATATCAATTCTTCTTTACATTCACACACAGTTTGTGTCT1360.11226587200039624No Hit
ATTATAGGGTCACATGTGACTGGTGCTTTCACACTTGCCACTCTGTCTTTCT1360.11226587200039624No Hit
CCGGCTGGGCTGTTTTCCTGTAATTAAGTTTATCTTGAGACTTAGGTATGTT1360.11226587200039624No Hit
GCCATTGGGGAGACTTCGGTTGAGGAAACGGGTATTTCATGTCTCAGGGAGT1350.11144038764745214No Hit
TCAAGTCGGGATGCGCCCCACCCCCATGAGCCAGTTCAGCCCTACTGGGGGC1350.11144038764745214No Hit
ACAAACGGGAATTTTACTAATTTATTCCATGCAAAATATTTTTGTTGAACCT1340.11061490329450806No Hit
CCAAAGGGGTGACTAGTTGAATTTTCTCCCAATGTTCTCATAAATAAAAGCG1340.11061490329450806No Hit
TTTCACGGGGGCTCTTCCGATCTCGGTGCGGGGGAGCCGGGGAATGTGAAGA1340.11061490329450806No Hit
GAGAATGGGGACTCGTGTCTCGCTACCAGCTCCCCGCTGCCCTGCGCTCGGC1340.11061490329450806No Hit
GCAAACGGGGAATTAACATAATGAAAATGCTGAATATCCAGATTAGTGAAAT1340.11061490329450806No Hit
TAATCTGGGTCTGGCTATGGGGTTACTAGAGGACACTTATCTTTGACATGAT1330.10978941894156397No Hit
TAAGCAGGGATGATTACATCAAAAAAGTACTAAATGGCACATAATTAGGAAC1320.10896393458861987No Hit
TTGACGCGGGTAACAGTGCTCAAATTCAACTAGGTCTTTCAGCTTTTTATAC1320.10896393458861987No Hit
TAACGCGGGATAGAATAGAAACAAGGGACATTGCCCATCCAATTCTAGAGGA1320.10896393458861987No Hit
ACTACCGGGGTCCTTTCCTTCACTGATTTGCTTTAAAAAAAATAAAAGATAA1310.10813845023567578No Hit
GAAACAGGGCCCTGATAATTACTTTGATTCTGAAAATGTTGAAAACTCCAGA1310.10813845023567578No Hit
AAGGCAGGGGAGACAAGAGAGCACAAGACTAACTTTGGTCTCTTGATCTTTG1310.10813845023567578No Hit
TTTGAGGGGAACAGAACAAAGCATATGTACCAACAATGCATGTTTATATTCT1300.10731296588273169No Hit
AGAACAGGGAACTGGTGATTTAGTTTTATATTTAAGCTACAATTAATCTTTT1300.10731296588273169No Hit
CAAAGGGAGTCTGGAGATGGGTCAGGGAAAATGAGAAAACCATTATTTTACA1300.10731296588273169No Hit
ATTGCAGGGATCAAAAGTCAAAATATGACTCAAGTGTGAGTGGTCAATCATC1300.10731296588273169No Hit
TCCACTGGGGACAACATTTTTGTAATTTTTTCCAGGCAATGTTTTTTGAGGT1300.10731296588273169No Hit
AAAGCAGGGAGTCTTGAACTCCTGGTTTAAGCAGTCCTGCCTCAGCCTTACA1290.1064874815297876No Hit
CGTAGGGAAGAGAGAAAAGGAGGTAAAGGTTTTGAGAAAACCAAGATGCATT1290.1064874815297876No Hit
TTCAGAGGGGAAATGAGTGAGTCAAAGAAGGGAGTCCTAATATATCACCAGA1290.1064874815297876No Hit
GTGGCCGGGTCGTGCCGGGCTCCAGAGCTCTTTGTTCTCATGGGTGGCACCT1280.10566199717684352No Hit
CTCTAGCCGGGAATTAAATGGATCAGAAGGTGTGATTGGAAGAGGTGAGAAG1280.10566199717684352No Hit
ATGATTGGGGACTCGCGTCTGGCTACCAGCTCCCCGCTGCCCTGAGCTCGGC1280.10566199717684352No Hit
AGCATCGGGATAGCATTTAGTTTAAAGTGAAATTTGCTCTGACAGGGCTGGC1280.10566199717684352No Hit
GTGCAAGGGCACCATTTTGAGGATATATGTTTCCTTTCGCTTGGGTAACACC1280.10566199717684352No Hit
TCCTATGGGTCTTGCACGGGGGTTTATGATTTCAAAACCACATATGACCAGA1280.10566199717684352No Hit
CTTAGTGGGAGGAAACCAAGGCTTGGATCTCCACTCTGTTATGTACCAGCTG1270.10483651282389941No Hit
AATGGCGGGTATAAACAGACAATATGTGAGTGCCTTTTGCAGAAGAGGGTGT1270.10483651282389941No Hit
GGTGCGGGGATATCGACCAAATGCCTGTGAAGAAGCATTAATTAATGGATCT1270.10483651282389941No Hit
AAACCAGGGAGAATAACATGGGGAAAATGAATGCAGTGAAATGGTTCACGCA1270.10483651282389941No Hit
TATGTAGGGACAAGAACTTTTAAATCTGGGATATAAATTAAAGATCATATGC1260.10401102847095534No Hit
TTATTGGGGGATAGTAAGTACAGAACAGTAAAGTTAAAACGGATGTCTCCAT1260.10401102847095534No Hit
ACACGCGGCTGATCCAGGGATCAACCACAATGGTTGATTTTGAGAATATCTA1250.10318554411801123No Hit
GTTCTAGGGGACAGTAGATTTTTTTAAAAAAATGTTTTCCTGGCATTTGAGC1250.10318554411801123No Hit
CGATAGGGGTAGTGCCGGGGAGTCTAAAGCAGTTCACAGAAAAAATGCAGTC1250.10318554411801123No Hit
ATCAATGGGGTATTTCTCAGAATCCTCAGAATCCATTCTTGTTATGATGGTC1250.10318554411801123No Hit
AACGCAGGGATCCTACAGCAGCTTCTTCTGTTTGTAAAATATTGTTCAATGA1250.10318554411801123No Hit
GAATCTGGGAACTTAGGAGGCAGCAATCCTAATAGTCCTTCAGTGCATTTTA1240.10236005976506715No Hit
TACGATAGGGACCCACCATCCCTTTTATGAATGGTGATATGTTTATTTATCC1240.10236005976506715No Hit
GGGACTACAGGCTCCTGCCACCACGCCCGGCTAACTTTTTGTATTTTTAGTA1240.10236005976506715No Hit
CGTAGTGGGAAGTCTTTCCATTCTGGCTTGTTGGAAATTGAATGTCTAGGTG1240.10236005976506715No Hit
GGGGAAAAGCTGTCATTTCCTGTGCTAATTCACCCAACTCCAACTCCACATC1230.10153457541212307No Hit
GAATCAGGGGGGAGGAAGCCAGCTCTGTGCCTGGAGGGGACTCGCCGCCATC1230.10153457541212307No Hit
TTATGGGGGGGGCTTCTTCGTGGATGAGTCGGAGCCCCTTCTCCGCTGTGAC1230.10153457541212307No Hit
CAATTAGGGGTCTTGAATAGACAACTAGATGTTTTCCCAAGTCCAGTAGCTT1230.10153457541212307No Hit
TGTCATAGGGGAGAGGAGACTGCAGACTTCGGTTGAGGAAACGGGTATTTCA1220.10070909105917897No Hit
GTGCCAGGCAGACAAGGTGCCCATGCCTCTGGCTGCATTGGTGAGGATCCCC1220.10070909105917897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)