FastQCFastQC Report
Sat 31 Dec 2022
SRR5848907.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848907.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119152
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGC8190.6873573250973547No Hit
CTTATACACATCTCCGAGCCCACGAGACGACACAAAATCTCGTATGCCGTCT6200.520343762588962No Hit
GCAAGAAACAAGTCAACGTCAAGATATTTGGGAATGATTTCAAGAGACTTTG2130.17876326037330467No Hit
GTACCAGGGTCAGTATTTTCAAGGCTCTAACCCGCCTTCATCCAATGTGTGG1800.1510675439774406No Hit
TGTGTTGGGATGCTTGCAAACAAATTTTCATGTCCAGTTTGTGCTCACCCAT1740.14603195917819256No Hit
ACATAGGGGTTTTGCAGGGCCAAGATAATCTTGATTTCACAACCTGAAAAAT1680.14099637437894455No Hit
CAAAATGGGTGTCTCCCTTCTTGTGCAGTATCTCTAAGTGCTGAGAGGAGGT1670.14015711024573654No Hit
CGTTATGGGAAGAATATGCATCTTTATTGTCTTACCAATGATTAATATTTTT1600.13428226131328053No Hit
TTTGAGGGGAACAGAACAAAGCATATGTACCAACAATGCATGTTTATATTCT1590.13344299718007252No Hit
TCTGTAGGGGAACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTTTGAGC1590.13344299718007252No Hit
TTGTGCGGGTACCACTAAAATTGATGAGAATTCTTGTCTCCATGTGTAATTT1540.1292466765140325No Hit
TGAATGGGGTCCTACTTATTATTTTAGAGGGATTTTAATTCAATGATCAAGC1490.12505035584799248No Hit
TTTTCTGGGGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACA1490.12505035584799248No Hit
TGTCATAGGGGAGAGGAGACTGCAGACTTCGGTTGAGGAAACGGGTATTTCA1470.12337182758157647No Hit
ACAAACGGGAATTTTACTAATTTATTCCATGCAAAATATTTTTGTTGAACCT1460.12253256344836848No Hit
TTGGGTGGGGAACAGCTTTAGTCATGGAATACTGGGAGAAGGAATAACTTTC1460.12253256344836848No Hit
GTTTCAGGGATGCCAAAGAAGGGAGGGAGCTTTTGTTGTCTGGAATGAAAAG1460.12253256344836848No Hit
CAGCTTGGGGGCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGAT1450.12169329931516046No Hit
GTCGAGGGGACTAAAAGACCTTCTGGATGAAGTAATTTTACTAATTTATTCC1440.12085403518195247No Hit
TGATTAGGGAGATCAGATCAAGCTACAGCTCTACAACCAGCAGCACCGGGCT1430.12001477104874446No Hit
TTGACGCGGGTAACAGTGCTCAAATTCAACTAGGTCTTTCAGCTTTTTATAC1430.12001477104874446No Hit
GGTGCGGGGATATCGACCAAATGCCTGTGAAGAAGCATTAATTAATGGATCT1430.12001477104874446No Hit
CAAAGGGAGTCTGGAGATGGGTCAGGGAAAATGAGAAAACCATTATTTTACA1400.11749697864912045No Hit
AAGGCAGGGGAGACAAGAGAGCACAAGACTAACTTTGGTCTCTTGATCTTTG1400.11749697864912045No Hit
GATGTGGGGCATCTCCCACTATGCCTGTTAGCCTAGAGGAGTCCTGCCTGTA1380.11581845038270444No Hit
GCACTAGGGATCGAATGCAATTGCAGTGTGTCAGGGGATGCTTCCAGGAAGT1380.11581845038270444No Hit
CGTAGGGAAGAGAGAAAAGGAGGTAAAGGTTTTGAGAAAACCAAGATGCATT1380.11581845038270444No Hit
CAACTGGGGACTGGCGGGAAGGAGAAATTTTTATTCCTGGGTTGCTGAAAGC1380.11581845038270444No Hit
AAATTAGGGCACAGCCATTGTATATTGAATCTGTCAATACTGAGCAAATAAA1380.11581845038270444No Hit
GTTCTAGGGGACAGTAGATTTTTTTAAAAAAATGTTTTCCTGGCATTTGAGC1370.11497918624949643No Hit
CTGGCTGGGGGGATGTTTCAAGAACAGTGAGTGAATTGGTTAGGCTGGAGTA1370.11497918624949643No Hit
GATGGGAGAGGCTTCATACTGAGACCCAGATGGGGGAAAACAGCTTCCTCTC1370.11497918624949643No Hit
GATCTCCGGGCTATTTTGAGTCTATAAGATATATTTCATTTTAGACATGCCT1370.11497918624949643No Hit
TCGCCTGGTGTCTAGCTGCCTATTTAACATTTTGTCTTTCATTTCAACCTTA1370.11497918624949643No Hit
CCAAAGGGGTGACTAGTTGAATTTTCTCCCAATGTTCTCATAAATAAAAGCG1360.11413992211628844No Hit
TAATAAGGGAAGTTTACATTCATTGTAATCTGTAGGTTCTTTGTCCTCATCC1360.11413992211628844No Hit
GGTGCTGGGACGAGGGGTTTGGCCGCAAGCAGCACAAGGAGCTCTGGGCCCA1360.11413992211628844No Hit
CATATAGGGAAAGACAGTCTGTGTTGCAAAAGAAGCCCAAGGCTGAAGATTT1350.11330065798308045No Hit
GTGGCAGGGGTGCGCACTGGCGTGCGAGACTCGGCGGGCGCTGTTGAGGGAG1340.11246139384987243No Hit
GAATCTGGGAACTTAGGAGGCAGCAATCCTAATAGTCCTTCAGTGCATTTTA1340.11246139384987243No Hit
GAGAATGGGGACTCGTGTCTCGCTACCAGCTCCCCGCTGCCCTGCGCTCGGC1330.11162212971666444No Hit
GCCGCCGGGACATATAGCAGAGAGAACTATGTAAATTATCTTGCAGAACAAA1330.11162212971666444No Hit
GCTGCTGGGGGTGGTGTTATTCCGCAGTGCTTTCAGTCTTCCATGTGAGCTC1310.10994360145024841No Hit
CTAGATGGGATTAGGCAACATCCATCATAAACCAGGTAGCCCTGTGGAAGGT1310.10994360145024841No Hit
ACACGCGGCTGATCCAGGGATCAACCACAATGGTTGATTTTGAGAATATCTA1300.10910433731704042No Hit
TTCTGCAGGGGAACATTTTGTGAAGAGCCTGTTCAGGACTTTTGCCCATGAT1300.10910433731704042No Hit
CGTTTAGGGACTCAGGTCCAACTAGGGATACAGAAACACTGAATATTTCAAC1300.10910433731704042No Hit
GCTATAGGGGATACTAGAAAGAAGAACCATGCTGAGAATTTGCATGTTATAG1300.10910433731704042No Hit
TGTTTCGGGACCATCTGATCAGACAAGGAATGAAGCAATGACTGTGGGCTGG1300.10910433731704042No Hit
GACAGTGGGCTCTGCTCTAAAATTGGTGTTTGGGTGATCAGAAGCAGGTAGC1290.10826507318383242No Hit
GTATCTGGGATGAAGTGACTTATTAGCCATTCAGCGTATTAGTATTACAGAG1280.1074258090506244No Hit
GCTACAGGGTAGATGGGTGAAAAAAGAATGAGGTTCAAGGGAGCGTGCACCA1280.1074258090506244No Hit
TATGTAGGGACAAGAACTTTTAAATCTGGGATATAAATTAAAGATCATATGC1280.1074258090506244No Hit
AAATATGGGCTGAGAAATGGTGCAGTTCTGAAGATAGATGGACAAAACCTGC1280.1074258090506244No Hit
GTACTGGGGCAGAATGTATTTGCTTAAGCCGGGTTTTATAGCTTGATTTTTC1280.1074258090506244No Hit
GCAAACGGGGAATTAACATAATGAAAATGCTGAATATCCAGATTAGTGAAAT1280.1074258090506244No Hit
GATCATGGGAGTCCTGCTGCAGTTGTGCAGCAGAGGAGACTGCAGACTTCGG1260.1057472807842084No Hit
TTATCAGGGAATGAAACCAGCATTTAGTACCAGCATATGGTTCATATGCAAA1260.1057472807842084No Hit
GCTCAAGGGTCTCTAAACGGGGCGTCCAAAGTGGCTGGAATTGAAAGTGAAC1260.1057472807842084No Hit
TAACGCGGGATAGAATAGAAACAAGGGACATTGCCCATCCAATTCTAGAGGA1260.1057472807842084No Hit
CTATATGGGTAACATAGAATTGATCTAGCTCTTGAAATACCATTTTTGATTG1250.10490801665100041No Hit
GATATGGGGAGGAAGTCCAGACATTGGAATTATTACCCAAAGACATTAAATC1240.10406875251779239No Hit
ATGATTGGGGACTCGCGTCTGGCTACCAGCTCCCCGCTGCCCTGAGCTCGGC1240.10406875251779239No Hit
TGGCCTGGGAGAATTCTTAAACCCAAGGAATTTAATTTTATTTGGTATTTCT1240.10406875251779239No Hit
AACGCAGGGATCCTACAGCAGCTTCTTCTGTTTGTAAAATATTGTTCAATGA1240.10406875251779239No Hit
TATCATGGGCAGGAAGTGCAATTTTGGAGATGAAAAAATAGCTCATTTCTCC1230.1032294883845844No Hit
ATTGCAGGGATCAAAAGTCAAAATATGACTCAAGTGTGAGTGGTCAATCATC1230.1032294883845844No Hit
TTCAGAGGGGAAATGAGTGAGTCAAAGAAGGGAGTCCTAATATATCACCAGA1220.1023902242513764No Hit
CGTCCGGGCACCTCTGTTTAAACTTAAAAATAGAGACAAGAAAATGTTGAGG1210.10155096011816839No Hit
TTGCATCGGGACAGGCATACAGGCTCTAGTCAAGAATGAATTAGAGTGAAGG1210.10155096011816839No Hit
TGTCATGGGCAGGGCATTGAGCTCAAAAGACAGAAAGAGGCAATTTATGTGT1210.10155096011816839No Hit
GTTAAGGGGCTGGCTCTGATTTCTCTAATTCTTGTCTTTGCTGTTCTGTCAT1210.10155096011816839No Hit
AGCATCGGGATAGCATTTAGTTTAAAGTGAAATTTGCTCTGACAGGGCTGGC1210.10155096011816839No Hit
TGCCAAGGGCGATCTATAAGTGGGGTATTAAGGATAAATTAACATTTGACCA1210.10155096011816839No Hit
TCCACTGGGGACAACATTTTTGTAATTTTTTCCAGGCAATGTTTTTTGAGGT1210.10155096011816839No Hit
CCGAAGGGGAGTCCAGTCCCAAGATGGCGGCCACCATGAAGAAGGCGGCTGC1200.10071169598496038No Hit
CGTTGGGTAAACTGAATAGCAATTATTGTTCACAAATTTATGCATAGCATTT1200.10071169598496038No Hit
TGCGTCAGGGTCAAAAGAGGAAGCTTGGTGATTGGGTCTGAAAAGGAAATCC1200.10071169598496038No Hit
CAATTAGGGGTCTTGAATAGACAACTAGATGTTTTCCCAAGTCCAGTAGCTT1200.10071169598496038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)