FastQCFastQC Report
Sat 31 Dec 2022
SRR5848896.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848896.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70076
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT4680.6678463382613162No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC3620.5165819966893087No Hit
GATCTAGGGCTTACATATAAAACTAACAAAACATGCACAGAATCTGTATGAT1200.17124265083623494No Hit
TAACTCGGGAAGGGGCCAATTCTAAGTATTCTTCACGGCAGCCAGAAGTTAA1170.16696158456532906No Hit
CAGTCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1120.15982647411381928No Hit
TGAAGCGGGCTTTGAACTTGTCTCCTGTCTTCAGAGTGGCAGCTTACTTCTG1090.1555454078429134No Hit
CGTTCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1080.15411838575261147No Hit
GTCGCAGGGATGCTGACTCACTGGTACAAACAGCTGTTGAAGCTCAGAGCTG1060.15126434157200752No Hit
TAATACGGGGGCCAGTCGTTTGTGCTTCTATGAAACCTAAGATGTGTTACAG1020.1455562532107997No Hit
CTGTTTGGGGTCTCCAGCAAGGGATTCGGGCGAAGACAAACGGATGCACCCG1000.1427022090301958No Hit
TACAAGGGCGTGGAGATAATCAACACTCAGGACCTTCAGCCTTGAACGCCCA990.14127518693989383No Hit
GCGCTGGGAGGCACAGCTGAGTCCGGAGCAGACTGAGCCACCTAAGAGGGGA990.14127518693989383No Hit
ATAACAGGGCAAGACCAGAATTGGAGAGCTAGTCATGCCCTTTCCTACTAGA990.14127518693989383No Hit
TAAGCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC990.14127518693989383No Hit
AAGCGGGGCCAAAAAGGAAACATGAAAACACTCTCATATTCTTTCTGTTTTC980.13984816484959187No Hit
CTCACGATGGGACCTAAAAAGGCCTTGTTTTAAATTTCTGTGATACCTAAGA970.13842114275928993No Hit
TTGATAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC970.13842114275928993No Hit
TTACTGGGCAGGAAGCATTTTAGCAAAAGCTCAACTGGAGGTTACTGATGGT970.13842114275928993No Hit
CATGCTGGGATGGTTTCGGGGTCTAAACTTTTGTTTCGTTTTGTAGTCTTAA950.13556709857868599No Hit
ACGCTGGGGATCCTCACGGAACTTTCATTCTAATGGGGGAAGACTGACTATA940.13414007648838405No Hit
TATTATGGACCAGCACCTATTGAGCAATGTCTATTATAGTAATTTTGCATAC930.1327130543980821No Hit
TTCACAGGGAAGTGTCTTGGATTTGTGGCTACCTCTGTTGGACTGTCCAGAC920.1312860323077801No Hit
AGATAGGGGCGAGGATGAGTGCAGCACGCAGGAGGCCGACGGCCAGAAGATC920.1312860323077801No Hit
CAGATAGGGCCATCAAGCAGTCGCCTTCCACCTTAGAACCTGTTCACAGTTA920.1312860323077801No Hit
CCAATTGGGGGGACTAAGGCACTGCAGATTTAGCCCAGACCCTTGACTCTGA910.12985901021747817No Hit
TCACGCTGGGATAGAGAAAGTGATGGGGCCTCCGATGAAGCAGAGGAAAGTG910.12985901021747817No Hit
AACACTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC910.12985901021747817No Hit
GTAGAGAGGGAGCAGTCTTCTCAGTAGCCCAGAGTTTCCAGGAAACAGGAAT910.12985901021747817No Hit
CTCGTTGGGCTGAGTAAGCTGCCTGGACCTGCTACCACTGATACCTGCCTAC900.1284319881271762No Hit
TTTTCGCGGGGTACGCAGGGGATATGAAAAAAACTGTACTGTGTTAGCACTA890.12700496603687425No Hit
TCATATGGGGAATTATAAGGAGTCTCTATTGTTCTTTCATTTTTAATTGTAT890.12700496603687425No Hit
ATCAACGGGTATGTTGAGTTTTTGTTTGTCTTGGAGTATTTTCTAATTTGTC890.12700496603687425No Hit
CTACAAGGGCAAAAAGAAATAGAAACACTTCATTAACTTTGTGATTGCCAAA880.1255779439465723No Hit
TTTGCGCGGGAGCCCAGAGACAGATGGCAGAGCTATCTCTCTCATAGCTTTT880.1255779439465723No Hit
TGGCTTGGGGAGTCAGATGCTGTGGTACTTGGCATTTAACAACTAGAATTCA880.1255779439465723No Hit
CGGAGCGGGCTGGCTTTAAGTCCCATGTCATTTTTTATGCACCACAATTACT880.1255779439465723No Hit
TAACTTGGGCAAAAGAAAAAGAAGAAAAAAACTAAAAAGATATTTGATATTG880.1255779439465723No Hit
TTAGCAGGGGAATGAAAAAACAAAAAGTAGGAACCAAACATAAAAGGTCTAG870.12415092185627033No Hit
AATCATGGGGCACAAAAAATGAATAATAATGTAACAGTTTCTGGGAATATGT870.12415092185627033No Hit
ACGACTGGGACACGAGGGCTTTTGTATTGTTCTACTTTTTCAGCCCTTTACT870.12415092185627033No Hit
ACATCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA870.12415092185627033No Hit
GTTGTTGGGAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTGAGAAGCTAAA860.12272389976596837No Hit
CATGGGGCACACGGTACTGTAGCCCCCAGTTCCTCCCTAGCCTTCCATCCCT860.12272389976596837No Hit
TTTAAAGGGCTAGGCACGGGGAAGTTCTAAGAGATTTAGAAGCTCTTTGTCA860.12272389976596837No Hit
GGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGAGCTT860.12272389976596837No Hit
CAAATAGGGGTCTGGACACAGCTGAGAGAAACTGGTTGATGTCTGCTAATGG860.12272389976596837No Hit
GTTTACGGGGGTCTGAAGGCAAATCCTGCTTTAACTTGGTGGTCCATTTCCC860.12272389976596837No Hit
AACTTAGGGACTAAAAATGAGACAGAAAGGTGAATATTTGAGAGTAGCAGAG860.12272389976596837No Hit
ACTAAGGGTGTTATAGGAAAACAACTTGGTATTTAAGTATGAAGTGGATGAA850.12129687767566642No Hit
GTGTACGGGCTGGTTTCCTTCCTGAGTCTGGCACAGACGGGGCTATTGTAGT850.12129687767566642No Hit
TTGCAAGGGTGAAGCCAAGAAGGAACCTGATCTAACTTAGGTTTTAAAAGAA850.12129687767566642No Hit
CTTTATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC850.12129687767566642No Hit
AGTATAGGGCCAGGATGATGATCCTTGTCCAGCTTGTTGCTGATCTTTGCAG840.11986985558536446No Hit
AGGTAAGGGCGGAGCACTTGCTCTGAGGAATCCCAGGGTGACTCTGTCGGGG840.11986985558536446No Hit
TTTTCTGGGAGCGCCTGACAGAATCTCCGTGTGCTTTGGTGGCCAGCCAGTA840.11986985558536446No Hit
CGCGATGGGGTCTTTCACCATCTGAAGCCCACTAATTTGTCTTTTATATATA840.11986985558536446No Hit
ACACTTGGGCAAGATTTAACTCTTACTAAATTTATAACAGTATTGGACCATT840.11986985558536446No Hit
CTGCCAGGGAATATACGATTTTTTATGAATGTTTTTCATTTAATAATTATGA830.11844283349506252No Hit
TACACCCGGGCATGAAGAAAATTACATCAAGGCACATCAAAGAAGCAGCCAT830.11844283349506252No Hit
TGCTATGGGATTAGGAATAGCTTTGATTATGACAGCCACAGTGTTCTAATGA830.11844283349506252No Hit
TAATTGGGGAAGGATGTCAAAATAGTTCATGAAAAGATACTCAACATTATTA830.11844283349506252No Hit
TATCATGGGAAGAGCAGCTTTCATTTGTTTTGATGAATAACCATATTTTCCT830.11844283349506252No Hit
TGGCCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA830.11844283349506252No Hit
CAGCTCGGGCGATCTGACAGCGGGCCGAGAACCTAGCTCCCGTGAAGAACCA830.11844283349506252No Hit
ACTAAGGGGAGCCTAAGTATGAAATGAATACTTTACTTGAAGATCTATTTTT830.11844283349506252No Hit
GCCTATGGGCGATCTTCGGCGGGGTCTTCCAAACTCCTGTTAATGTGAATAT820.11701581140476054No Hit
CGGCCATCCACAGCGAAGCCTTCAAAAATCCCCACGCCCCAGAGGAAATCAC820.11701581140476054No Hit
GTCAAAGGGTTTACTAAGAATAAAACATCCAAATTTTAAGTATTATGAAATA820.11701581140476054No Hit
GTAACCGGGGAAAAAAGTATGTAAAATTCCTTTATTTAGAAAGCAATGGATG820.11701581140476054No Hit
TCAATTGGGAGAAGATTTATTCTGTTAATTTTTGGTCTTCATAAACCTAACT820.11701581140476054No Hit
TTTTTTGGGCCACCACAAGGATGACCCTCCTCCTCCTGAAGATGATGAGAAC820.11701581140476054No Hit
TTCACAGGGGAGCTTTGGCAATAGAATTGGCTAGATCAGGAAGCCTATGTCA820.11701581140476054No Hit
TCAATAGGGTGGTCATTGCATCGAAATGTACATTGGTGATTCTGAAGCTTAT820.11701581140476054No Hit
TCTAATGGGGGGGGCGGGGAGATCCCAGCTACTAGAGGACGCCCGTTCCAAT820.11701581140476054No Hit
ATAAATGGGGATCTAGATTTTTAACTGTGATTCTATTTGTATGTTCCAAGCA810.11558878931445858No Hit
TCCACCGGGGAATACAAACGTTTTTGCAGGTTCTGCTGTGAAATGTGGTTTG810.11558878931445858No Hit
GAACTTGGGTGTGAAACCTTGCTGCAAGCACAGCCCTTATGCGGTTAATTTT810.11558878931445858No Hit
TGTTTGGGGCTGCAGCAAGTACTGACCTAGGGAGCTGCAGGGTGTCAGCCTG810.11558878931445858No Hit
GTTCAGGGGATTTAACCCTCACCTGGTGCAAATGCATCATGTAAATTTTGAA800.11416176722415664No Hit
CATGAGGGATAATTGTTTGACCATACTGAATCATTTACATTGTCTAATCCAT800.11416176722415664No Hit
GTATTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA800.11416176722415664No Hit
ATATTAGGGATGCCTTAAGTTGCAGTCTCATTTTGATAATCATTTGCTTCCA800.11416176722415664No Hit
TCTTCCGGGAACTGCTAAGATTGCAGACAGAAATAGCACACAACCACTGTGA800.11416176722415664No Hit
GACAGTGGGATGGCAGGTGTTGACTCTTTTAACCTCCTTTGTTGAATTTTAA800.11416176722415664No Hit
CGCCTCGGGATAGTGCCTGGACTTATTATCTATGGTAGCAGATGTTGAGTGT800.11416176722415664No Hit
GCGCCAGGGAACAACTGCATCTCTCTCACCCAGATTCACTAATTGTGAATGT800.11416176722415664No Hit
CTCAAAAGGGCAAATCTGAGTTATTGGCCTTGAAGAGGAGATATAGAGAGAG790.11273474513385467No Hit
ACTTAGGGGTGGGGAGGCCTTGGGGGACTTACAATCACCACAGAAGGAATAA790.11273474513385467No Hit
ATACACGGGATGCTCATCAATGGCGGATCAGAGAGAAAATCCTGCTTCTGGA790.11273474513385467No Hit
GAATTTGGGCTGCTGAGTACCACCGCAAAGCCCTGTGAGCGTCTACAGACAG790.11273474513385467No Hit
AGTTGGCGGGAAAGACGGATAATTTGCCTAGTGGGATTGGGCCTGGTGGTCT790.11273474513385467No Hit
CATGGTGGGATTGTGATAAATCTTTGCAAGTTTTGTCAGTTTTTGATTCTTG790.11273474513385467No Hit
CTTTACGGGAATAAATGAAAAATAGAGAGACATACCTGGCTCCAAAACAAGG780.11130772304355271No Hit
TGCGTGGGTACTGGAGTCAACTGTACATTAACTTGCTTGGAGGGCTATGATT780.11130772304355271No Hit
GATAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA780.11130772304355271No Hit
GTGTCTCGGGACATATATATTTATGTTCACTAAAAAATTATTTAATACATTC780.11130772304355271No Hit
CTATAGGGGAGATACTACCTGTGATAATAGTGAACTTTCTTCCATATCAAAG770.10988070095325077No Hit
GGTCATGGGTGTACATACTTGGAACAACAAACTAGAAATACTGTACTTCTGT770.10988070095325077No Hit
TGCGCAGGGAGTTTAGATTTCCGGGGTAAATATAAATGAGTTTCCTTTAAAC770.10988070095325077No Hit
TGCACTAGGGTGGAGTGTGAATTCAGCATTCTCCCAGAGAATGAGTGCTGCC770.10988070095325077No Hit
CCAGCAGGGGTAAAATGAAGATAGTCATAGTATATACCTTATATATGTGGTA770.10988070095325077No Hit
GCGGTAGGAAGGAAAAGACTGCCCTATCTCCTGGAAGAAGAGAATCAAAATA770.10988070095325077No Hit
CATCTTGGGATAGCACACTGTGTAGCTCTAGTGATGCGTACATGTATGCTGG770.10988070095325077No Hit
TAGCAAGGGGATCTAAGTCTGGGACTTATACACAGGTAAAATTAGTTTTTTT770.10988070095325077No Hit
CAACGTGGGACAAAAAAAAGTTTTAGCTAGTACTCAATAAAATATCATGATT770.10988070095325077No Hit
TGTAACAGGGAGATATGGCAGAGTGTGTAACTAATTTTAGTATTGTCTTTGC770.10988070095325077No Hit
TTCTGGGAGATTAATGCAAATCAAAACCACAATGAGATACCATCTCACACCA760.1084536788629488No Hit
TGCACTGGGCGATCTCAAAGCGGGGAAAAAAGCCTTTCAAAAGTTTCTCACC760.1084536788629488No Hit
TTTGGAGGGGTCAGGTGAAGCAGAACAATGACTCATTTATTTCAGCCTGGTT760.1084536788629488No Hit
TGTTCAGGGATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTT760.1084536788629488No Hit
TTGTGAGGGACAGTAAGGTAAGAGAAAGAGAAAGCAGGAGGGAGAGAGGAAA760.1084536788629488No Hit
CGTCAAGGGGATTTACCAGTTTTAATGAAAGATTAATTATGAAGGTAGAAGC760.1084536788629488No Hit
TGATCAGGGATAGTTTGAAAGAACCAATAGTGTATTACAGGGAGTTTAATTA760.1084536788629488No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGT760.1084536788629488No Hit
CAACTCGGGCATAGACTGCAAGTGTCAGCAATTGGAAAGAAGTACTGCAACA760.1084536788629488No Hit
GCCGTAGGGGATCTGTATGCGGTAAGAAAAATTTGTTTTCTTTGCATGTTAG760.1084536788629488No Hit
AACTATGGGATTACATGTTTTCTAAAATGATTAGATTGAAGGTTTACAGCAT760.1084536788629488No Hit
TAGTAGGGGAAATCTATATGTGCTGGAATACTTAGAAATAAAAGTTTTGTTT760.1084536788629488No Hit
ATTCATGGGGGATCTGACAACGGGGCAAATGAATGCCTTCCACTGAACCGAG760.1084536788629488No Hit
ACGCAAGGGACACCAATGCGGACAAGCTCCTAGAAGCAGCAGAGCAGTTGGC750.10702665677264683No Hit
GGTTCGGGGAACTCTGACCAATGGAGGATTATAATTTTTTTATTAGCTCTTT750.10702665677264683No Hit
AAGTCTGGCTACGTGCGGGATTTAATTCATCCAGTAGTTATTCAGGAGCATG750.10702665677264683No Hit
GCGACAGGGAGATGAAAATACCATAGATTATCATAATGAGGGCACTTGCCCA750.10702665677264683No Hit
CGCATTGGGACTCATGTTTATGTTGTGAGCATGTAGAAACAGTAATGCTAAT750.10702665677264683No Hit
AAACACGGGAGCCCCTGGCAGACATAGCTGCTTCAGTGCCCCTTTTCTCTCT750.10702665677264683No Hit
CATGCTGGGATCTGCAATGCGGGCTAATGCTGTTGAAAAATCTCATGTTGAA750.10702665677264683No Hit
TTGTATGGGAATATGGTGAGATCAGACTCCCTAAGACTCTTTTCAGGTTCAT750.10702665677264683No Hit
AACTTAGGGCAGCAGAGCCGAAATCAGGCAGGCATAGACTCCCTCCTCTCTC750.10702665677264683No Hit
TTAGCAGGGATAACACTCAATTGACAATAGATATGAACTGTATTTTAAATCA750.10702665677264683No Hit
CAAATAGGGAAGGCCTACTTGGAGCTTGAGATCACCCTTTCTCAGGAGCAGA740.10559963468234489No Hit
TCGCCAGGGACTACATAGCATATACCCAAAATCACTGAAGAAAATCGCTGGC740.10559963468234489No Hit
TAGCTTGGGGACAGGATCTTGCCATGTTGCCTAGACTGGTCTCAAACTCCTG740.10559963468234489No Hit
ATCACTGGGCATTTCTCTGTGACTGATTGGTTTGTCTCCCTCCCTTCCCAGA740.10559963468234489No Hit
ATGGTAGGGGAATTACTATGTAATTCTAATGAATTAATTTTAAGTGAATTTT740.10559963468234489No Hit
CCCCCCAGGGATATGTGGTGCCTGTCATAAGCTCCAGAGAGCTGCCTTCCAC740.10559963468234489No Hit
GTTGCTGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG730.10417261259204293No Hit
GCACTTTTTTCTTAACCACATTAATTTTATGAATATCTATGTGGTCAAAGTC730.10417261259204293No Hit
CTAACTGGGACTTGTGCCACTTAACATGGACTCTTTCTTCTTTGCCCTCACT730.10417261259204293No Hit
TTACGAGGGATAAACACTGGGACCAGTTCCGGGGTTAAGAATTAATTTTTGT730.10417261259204293No Hit
GTATTTGGGATGGTGAAACTCCATCTCTACTAAAAATACAAAAATTAGCTGA730.10417261259204293No Hit
TGTCCAGGGATTTGGGGAAGGAAAAGAAAGTAGTTGTTTTACAAGGGAGGAA730.10417261259204293No Hit
GGACTAGGGTGCCAAATCACCTGTCAAAGTAGTTGCAGCTTTTTGTATTTCT730.10417261259204293No Hit
AATATCGGGAACAGCAGCAGCAACAGATACAACAGTTGCGATTCTTGCAGCA730.10417261259204293No Hit
TTCGTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA730.10417261259204293No Hit
GATCTAGGGCTTGCTTAAAATATTCAACCAATTGTGAACTCAGAGTTTTATG730.10417261259204293No Hit
TTGGCTACTGTAGAAGCAGTCCTGTATGGAGACCTTGGACCAGCAGGGGAAG720.10274559050174095No Hit
GTCTGGGGGAACTCTTTCTTGTATCTTGTCTCTTTAGAGAAGGAAATTTTTG720.10274559050174095No Hit
CAGTGCGGGGATCAATGCACATCAGAGTGACATAGCCTGTGTGTCTCTAAAC720.10274559050174095No Hit
TACATGGGATGTTTGGATTGCAGAAGAATTTGTAAGATGAATACTTTTTTTT720.10274559050174095No Hit
CATACAGGGACCACTGAACCCTAGACATATTAAGCTGATGGCCATCTCTATA720.10274559050174095No Hit
AAACAAGGGCGATCTCTACATGGGGACAAGAAAGCCTCTATATAAAATAACC710.10131856841143902No Hit
GTTACAGGGCGGACACATTTATTGAATAAGAAGCTCAAGAATATACTGATTA710.10131856841143902No Hit
AACATAGGGACGCTGCCGCCATTGCTAGTAGCCGATATTTCCTCCCACCCCC710.10131856841143902No Hit
TAATACGGGACTTCTGGAAGAGGAGAACAAAGAACGTGCTAAAAGAGAAATG710.10131856841143902No Hit
AGTTCTGGGGGAATCAGGCGCCGGGTAGTGGGTTGCTGGGCTGGGCTTGCTG710.10131856841143902No Hit
TGTGCAAGGGATGCTGGTGTGCTTGGGAGCCAGAGATCACCTCCTACACCAC710.10131856841143902No Hit
CATATAGGGGTTTCAGATCCAGAATCAAATCCTCACATTTAGATTTGACCTT710.10131856841143902No Hit
GCAATAGGGAATATATCTTAGCTATGTAGTTGCTGTGGACTTTTAATATTTC710.10131856841143902No Hit
CATGCTGGGCTTGGGCCTCAGGAAGAGGTTGAACAAAAACAAATTCTTTTAA710.10131856841143902No Hit
GTACAGGAGAAAAAATGAATGACTAAATCATTCCTATGATGACAGAAACCAG710.10131856841143902No Hit
TGGTAAGGGCAAATGTCAAATATAAAACATAAAACTACAGATATTTTAGAAA710.10131856841143902No Hit
GTCAAAGGGGGAGAAAAACCTTACAAATGTAATGAGTGTGGCAAATCCTTTA710.10131856841143902No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)