FastQCFastQC Report
Sat 31 Dec 2022
SRR5848891.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848891.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157619
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC6410.4066768600232205No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT6220.39462247571676No Hit
GGTACTGGGCATATCTCAGAATGTGACTGTACTTCCAGATAGGGTCTTTAAA1890.11990940178531777No Hit
GGTCATGTTTTCATCTAGGTAAGGTATTAGCCTGTTCACATATTTCTCATGT1870.11864051922674296No Hit
CCTTGAGGGATTGATTTGAAGATTTGTTAAAAGTGCTTTTAAAGAGAAAAAT1870.11864051922674296No Hit
CTAGTTGGGACCATCTTCAGGCAGGGTACCAGCACCAGACACCTCCATTGAA1750.11102722387529422No Hit
TTCAAAGGGAGCTGAATAACAATAGTTGGAGAACTCAGTACTTCACTTTCAA1740.11039278259600684No Hit
TAATAAGGGAGTAAAACGATCTTTGAAATGGTTCAGTGAGGAGGGAAGGATT1720.10912390003743203No Hit
GCTATGGGGACTATTTGACAAAGATGGTGATGGAACTATAACAACAAAGGAA1690.10722057619956984No Hit
ATTGTCGGGGAATGAAAACCATAAGCAAGAACCAAACTGAGATTCTGTTAGG1670.10595169364099506No Hit
AGAATGGGGTGAAATGTCTATATACTTTTTAAGGTAATTAATGAAGATTTCA1650.10468281108242028No Hit
AGCATTGGGTAAAAAGAAAACATTAAGCTTTCCCGTGTGGGAGAAGGAGAAT1650.10468281108242028No Hit
GATAATGGGGATTTTTTAAATGATACAATCAGTCAGACTGGTGATATGTCTT1630.10341392852384547No Hit
CCAACGGGGGAAAAAGAAAGAGAGAGAGGGAGAGAGGGAGGGAAGGAAGGAA1630.10341392852384547No Hit
TTGGCTGGGTATAGTCAAACTACTAAAACCAACCTACAAGAGAAAATCTTAA1620.10277948724455808No Hit
ATACGCGGGGAGAGATAACTGGTCCAGTTCTGATGGCAAAGATGATCCAATT1620.10277948724455808No Hit
AGTCTCGGGATGAAATAGTTTCACTTAAATGGGACTCTAGCCAAGGCAGTTA1620.10277948724455808No Hit
TACGCGGGCAGAAACCATGGAGACCAGAAAGAAGTGACACACATTTTTTTTT1610.10214504596527069No Hit
CTATTGGGCTCCAGGTAGGAAAAAATGAAAGCTATTTCATGCAAACATTATC1610.10214504596527069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)