FastQCFastQC Report
Sat 31 Dec 2022
SRR5848890.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848890.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157861
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC6500.4117546449091289No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT6490.41112117622465333No Hit
CCTTGAGGGATTGATTTGAAGATTTGTTAAAAGTGCTTTTAAAGAGAAAAAT2050.12986108031749452No Hit
GGTCATGTTTTCATCTAGGTAAGGTATTAGCCTGTTCACATATTTCTCATGT2030.12859414294854335No Hit
CCAACGGGGGAAAAAGAAAGAGAGAGAGGGAGAGAGGGAGGGAAGGAAGGAA1860.11782517531245844No Hit
AGCATTGGGTAAAAAGAAAACATTAAGCTTTCCCGTGTGGGAGAAGGAGAAT1840.11655823794350727No Hit
CTGCTCGGGAGGAGATTCGAGTTTCCCAGTTTACATGAATGAAGTCTGAATT1800.11402436320560494No Hit
GTAACTGGGGGAAGTGGCCCTTGCAGGCAAGAGTGCTGGAGGGCGGCAGCGG1780.11275742583665377No Hit
TTGCAGGGATGATTCCATTTCTGTTAAATGTATTCTGTAGCGAATAGACAAA1720.10895661372980027No Hit
ACCAGAGAGAAAGAGTTAGAAATGAGTGTAGACTTCCTCTAGCATCTTTTCA1720.10895661372980027No Hit
CTGCTTGGGAGATGATTTTGGTACAGAAACAGTAAAGATTGTAAGGTCCCCA1710.10832314504532468No Hit
CAAGCTGGGACTCCCAGCCTTCAGAGCTGTGAGAAAGAAATATTTGTTGTTT1660.10515580162294676No Hit
ACAAGAGGGGGGACACTGCTGGGTAATGGGGAAATGATTTTTTTCCCCAATA1640.10388886425399561No Hit
ATTGTCGGGGAATGAAAACCATAAGCAAGAACCAAACTGAGATTCTGTTAGG1640.10388886425399561No Hit
AATCAAGGGAATGTCTTTGGAGAGAACTTCTGCCTGATAAACACCCAATTCT1640.10388886425399561No Hit
TGTGGCTGGGTGCCTGACTTAGAGAAAGAAAAGCAATAATTTTACAGGCATT1630.10325539556952001No Hit
GACTACGGGAATCTTCTCTTGAAAACAAGAATAAATAAAGCACTCACAGCAA1630.10325539556952001No Hit
CTGTAAGGGGGGTCTGGCTATTTACAATAACTGTATACTGGATGTACATTTT1630.10325539556952001No Hit
ATAGCAGGGATAAATAAAGCAAATAATTGAACATGAACTGAATGAAAAAGGA1620.10262192688504444No Hit
GGTACTGGGCATATCTCAGAATGTGACTGTACTTCCAGATAGGGTCTTTAAA1620.10262192688504444No Hit
TCTTGCGGGAACCCTGGCCTCATTTAGTACATTAACCACCTTATGAGAATTA1620.10262192688504444No Hit
TGTGCAGGGATCTGAAGTTTTCAAAGCAGACCTGTTCCTGACCTTTGCAGTA1610.10198845820056886No Hit
CACGAGGGGATCTCATAAATTTGCTACATATAGTTTTCTCTCCTAGATTTAT1600.10135498951609327No Hit
GGCCACGGGGATCTACTGACGGGCAGGCTTTGCGAAAGGTTTCCGTTTCAGA1590.10072152083161769No Hit
TCGATAGGGAATCCGGATCGAGGGGGACGTCACCCTCGGGGGGCTGTTCCCC1590.10072152083161769No Hit
GGCCTTGGGGGCCGGCGCGTCATTGTCGTCATCGTTGCCCGACCGCTTTCCG1590.10072152083161769No Hit
TCACTTGGGATCCAAGAGGTTGCTAATCTTCACCTCTCACATACTAAAGCAT1580.10008805214714211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)