FastQCFastQC Report
Sat 31 Dec 2022
SRR5848889.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848889.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences158005
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC6290.39808866808012405No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT6090.38543084079617734No Hit
GGTCATGTTTTCATCTAGGTAAGGTATTAGCCTGTTCACATATTTCTCATGT2140.13543875193822982No Hit
CCAACGGGGGAAAAAGAAAGAGAGAGAGGGAGAGAGGGAGGGAAGGAAGGAA1880.11898357646909909No Hit
GATTCGGGACTTCACGAAGTTATTGTGAAAAATAAATAGCATAATCCATGGA1860.1177177937407044No Hit
TCAAAGGGGATATTGGAGTGATTTGTGAATGTAAAACATATTAATATCTAAC1800.1139204455555204No Hit
TGCTACCGGGACATGTACAGGTTTTTTAAAAAACAAAATGAGATACTATAAA1760.11138888009873105No Hit
AGTCTCGGGATGAAATAGTTTCACTTAAATGGGACTCTAGCCAAGGCAGTTA1740.11012309737033638No Hit
TTTGCAGGGATTCCCATTAAAATACTACTTTAGCTGGATCCAGAAAATGGAT1720.10885731464194172No Hit
CACGAGGGGATCTCATAAATTTGCTACATATAGTTTTCTCTCCTAGATTTAT1720.10885731464194172No Hit
GTAACTGGGGGAAGTGGCCCTTGCAGGCAAGAGTGCTGGAGGGCGGCAGCGG1720.10885731464194172No Hit
CCTTGAGGGATTGATTTGAAGATTTGTTAAAAGTGCTTTTAAAGAGAAAAAT1710.10822442327774438No Hit
TTGGCTGGGTATAGTCAAACTACTAAAACCAACCTACAAGAGAAAATCTTAA1650.10442707509256036No Hit
TCTGCTGGGAGATGAATGAGATAAGAAAGAATTATAAAGACGTAAAATGGAG1640.10379418372836303No Hit
ATAGTGGGGAAACCAGTCAAAGACACATCAGTAACAGAGAACTATCGGCCAA1630.1031612923641657No Hit
GCATGCGGGATCTTAAAGGCATTCAGATCTTACCAAGTCCACAAGCCATCTA1630.1031612923641657No Hit
ATTCGCGGGATCCGCCATCCCACTGTGGAGATGAAGGTGTGTGCTGATCCCC1630.1031612923641657No Hit
AACATAGGGGACTTCGGCTTGGTGAAAGTCACCGCAGAGAAAGGACCGTCAG1610.10189550963577101No Hit
CTGCTTGGGAGATGATTTTGGTACAGAAACAGTAAAGATTGTAAGGTCCCCA1600.10126261827157368No Hit
GTTGCTGGGAAGATATAAAAAAAACAAAGGAATAACTGGATTAAGCATCAAG1600.10126261827157368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)