FastQCFastQC Report
Sat 31 Dec 2022
SRR5848867.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848867.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121117
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT5700.47061931851020083No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC5430.44832682447550715No Hit
GCGCAAGGGTAGCATCATGTCTTTAGAGAAAGGTCAGCCTCTCTGGTTGCCA1710.14118579555306027No Hit
TCAAATGGGTGGTAATTGTTAGCATTTGCTAATAATTAACTTCTCGTCAAGA1640.13540626006258413No Hit
GCGCAGGGGAGGCTTTTACCTTTATTGCTTTAGCATAAATTTGGTTTACTGA1610.13292931628095148No Hit
GACAGGGGGATTTAGCAGCCGTGGCAACTGCCAAGGACACATACAACAAAAA1600.1321036683537406No Hit
GAAGTTGGGAGCTGTTTATAGTGCTCATTTAGGCACACCTAAAGTGAAATAA1540.12714978079047531No Hit
AAGACAGGGCTTGCTCACTCATCCACTTGAAGTAAGAAAAATCAATCACTGC1530.12632413286326447No Hit
GCTAGTGGGGCCAGACACGGACCCCGCAGGAGATGGGTGCCCCCATCCGCAC1520.12549848493605356No Hit
CTCGTAGGGCATATCAAAAAGATAATCCACTATGATCAAGTGGGTTTCATAC1490.12302154115442093No Hit
AAAGCTGGGCAACAAAGGGTCGAGGGTTTGAGGCTTAAACAAGCCAACATAT1470.12137024529999918No Hit
GCACAGGGACATACATATCTTCTTTTAAATTTTTGTGGGTTAATTTGTAAAT1470.12137024529999918No Hit
CAATTTGGGATTAAAATATAAATATTCTATTAGCAAAAATATATTCTGTTCA1470.12137024529999918No Hit
TTGTCTGGGGCCGTGCAGAAGCTCTTTAGTTTAATTAGGTCCCATTTGTCAA1460.12054459737278829No Hit
CCAGCAGGGGAAAGAAAAATTATAAGAGATTTGACTGAAGCAAGGAAAAAAA1450.11971894944557743No Hit
GACAGGGATCTGAAAATAAAATTAAAAGCATAATTAGGCTTACAAACAAGAA1430.11806765359115565No Hit
ACACGCGGGTTGCTTGCTGTGGACTTGGTGGAGGACTCAGGGGAGGAAAGGC1420.11724200566394478No Hit
GCAGGGGGTTCCGTATTTCTATATTTTCTCCTTTACAGTGAACCATACTTGG1410.1164163577367339No Hit
AGCCTTGGGATGGCAGTGTTTGGGACTGTTTTGGCAGGTTAAGGAGTGGCAT1410.1164163577367339No Hit
TTCGGCGGGGTTTCTCATGATGACTCAGTTTTCCTAACATTTCTCCATCCAA1400.11559070980952302No Hit
GTTACGGGGCTGAGCTGGGAAGTACTTAAGCCACCCTGGTTAACTTCAGAAG1400.11559070980952302No Hit
AGATCAGGGTTCAATAAAATAGGTGAGTACTCAGGACTTTTCATTTTTCTCA1390.11476506188231216No Hit
TAGGATGGGGGATTCTTTCTTTGAGAACTTTCCAGATTCCCATGCCTTTTTG1390.11476506188231216No Hit
ATGCGTGGGAGTACTCCATTGTTTTTGCTATTTAAATATAATGTATCAAAAA1360.11228811810067951No Hit
ATAACCGGGATGTGTTGTATATATAAGTGTATAATATATTTTTCTGATTTAA1360.11228811810067951No Hit
GGCCTTGGGGGGGTTCCAGGAGAGAGGAAAGATATTTGTTACAATAATGGTT1350.11146247017346862No Hit
TTGTTAGGGATTAATGAAATAGGAAAGAAGCATGTAATAAAAAGGATCAAAA1320.10898552639183598No Hit
TTTACGGGATCAAAACAAGGTCACTGCTACCTTCTCTCTCCATTCCATCGAG1310.10815987846462512No Hit
GTTCCGGGGAAAATACATAATTAGATGTTTTCATGTAAGTGCAGAAGGGTAA1310.10815987846462512No Hit
CAAACGGGGTGTTTTGTCTGGTTTTGTTTATAATTATAAGGGTAAGTCAGCT1310.10815987846462512No Hit
GATGTGGGGGAGGAAAGACATTCGTAATAGCCCCAAACTAGAAACAACCCAG1310.10815987846462512No Hit
TACAGTGGGGAACTTAAGTCTGAATGTTGGAGGGATTATAACCAATGTTTAC1300.10733423053741423No Hit
AACAAGGGGTGCAGGTCTGCGGGGCCAAGTGTCCCGGCGGCGCACCTCGTGG1300.10733423053741423No Hit
TGCCACCGGGGCAGGAAGGAGAAAAGGTGTTCGAGGTTTGAAGAGACAGGGG1300.10733423053741423No Hit
TGTAAAGGGGTGTCACCTCAATATGAAAATTCTGGCATTGTGTTTATGACTC1290.10650858261020335No Hit
TAGCCTGGGGTGCCCCAATATCATGCTCAATAACTGTTTGCTAAAAAAAATG1290.10650858261020335No Hit
TAGTCCGGGGAATACATGAAGGCTATTGAGTTTTTGTATGCTGATTTTATAA1290.10650858261020335No Hit
AAAACGGGGTGGGAATTCATGAGGTTTGAATTATATTATGTTTCTCTTGGTG1290.10650858261020335No Hit
TTTGCAGGGTGAAACAGATAATTGAGAAATATGCCTAATGAAATGGATAAAG1290.10650858261020335No Hit
TCACAAGGGACCTTCTGATGTTGTAACTGCCGTAAGAGGAAAAGGATTATTA1290.10650858261020335No Hit
ATTAATGGGTAAGTTGTGATTTTTATGGTTGGAACCAAAGTTATTCAAATAG1290.10650858261020335No Hit
AGTCGGGGCGGAGATATCCATCACAAATTGCTTTTCATATATGACAAGAAAA1280.10568293468299249No Hit
TACTGCGGGGAACCTTTTAAAGTGCTGAACACAAATCCAAATTCGAATGGTT1270.1048572867557816No Hit
TTTTACGGGAGAACTACTTAGCAGAGAACAGAAATATGAAGATGGAATTGCT1270.1048572867557816No Hit
CTAACAGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGAA1270.1048572867557816No Hit
GGAGGTGGGGATTGGAAGGGTTAAGGTGGAAAAATAAAAAGATTTTGAAGGT1260.10403163882857074No Hit
GGCTATGGGAGAAAGTTGATTGGAATGGCAAGTTTAAACCTTTGTTGTCCAT1260.10403163882857074No Hit
TTTCTGGGGCTTTGGGTGGGACTATAGTTATTAGACTACACATATCTCTCTC1260.10403163882857074No Hit
ATAATAGGGGGGTGTGCTGATTTTAAAAGGCTTGAATAAAACATAAATTTCC1260.10403163882857074No Hit
AAGCAGGGGGTCCGAGACCTTCAAGGTAACCCAATTGCGAATGCCACCATCT1250.10320599090135985No Hit
TACTTAGGGAGGTATCCAGCCTTTATCATATAAGCATTGACATTATCCAGGC1250.10320599090135985No Hit
GTTGTCGGGTGTTTTAAACACTCACTTTATTTTCCTTTTGTTGGAGAATAAA1250.10320599090135985No Hit
AAACTAGGGATTTTCAGAGGCAAAGAAGTTGGCCTGTAAAATAGAGTGCTAG1250.10320599090135985No Hit
AGAATTGGGAGGAGTGACTTGTAATTCTCATATGTTAGAAAGGCAGATCTCC1250.10320599090135985No Hit
GCTACTGGGCGACTAAGTGAGACCCTGTCTAAAAGAAAAGAATAAATAAATG1240.10238034297414896No Hit
ACATAAGGGCTGTTAGGGATTTAAATCAGCTATGAAAAATCTGCTCATTTTA1240.10238034297414896No Hit
TTTGCGGGGGTGATCGGATAGTAGGCAATACAAAATTGAATACATTTGGCTT1230.10155469504693809No Hit
TTACCAGGGATTTCATTGTATGAATGTACCACAATCTGTTTATCCACCCGCC1230.10155469504693809No Hit
ACACCTGGGGGAGACCATGACAAAGTAAGAGACACTTATGAGGTATTTCCAG1230.10155469504693809No Hit
ATTAAAGGGGATCCCCAGTGACCACGCCCCTCTGGCCCAGGGTTCCAAGGAG1220.1007290471197272No Hit
TGTAACGGGATTCTAACTGGTGTGAGATGGTATCTCATTGCGGTTTTGATTT1220.1007290471197272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)