FastQCFastQC Report
Sat 31 Dec 2022
SRR5848861.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848861.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122896
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC8170.6647897409191511No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT6000.4882176799895847No Hit
AAGTAGGGGAATCTGGGGCTCGTGACATGTGCTCAAATTAAAAATTACAAAT1890.15378856919671918No Hit
GTCGCCGGGACAGTAGAATCACTTGGAAGCTTCCTACATTCCTTCAGGGAGT1580.12856398906392397No Hit
CGTTACGGGATTTTGAGAATTTCCATGGAAAACTATTTTTTCTTTATTTTTC1370.1114763702642885No Hit
CATTGTGGGGTGTTAAGGTATCTCAGAAAGATGAGAGGGCAGAAAAAGCATT1340.10903528186434058No Hit
TATTTTGGGAAGTCAGTTCCACTGACAATGAATCTACTTGTTTTCTTAGCTT1310.10659419346439267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)