FastQCFastQC Report
Sat 31 Dec 2022
SRR5848860.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848860.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122036
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC7430.6088367367006458No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT6880.5637680684388213No Hit
AAGTAGGGGAATCTGGGGCTCGTGACATGTGCTCAAATTAAAAATTACAAAT1830.1499557507620702No Hit
GTCGCCGGGACAGTAGAATCACTTGGAAGCTTCCTACATTCCTTCAGGGAGT1510.12373398013700876No Hit
CTGTCAGGGATTGTCAGATAATGCTACTTTATCCTCTCATGGTTAACTAAAG1410.11553967681667704No Hit
ACATGCGGGTACATGCTACTTGCGCATTTCCATAACTTTTGTTTTCTTAGGC1310.10734537349634535No Hit
GTCGCCGGGGAAACAATGAAAACAATGACAAAACATATGAAGCAATGGTTTT1290.105706512832279No Hit
CTTGGCGGGAACACAATATTCTTAGAAAAATAGTTTATTACTTTAGGATTTT1270.10406765216821266No Hit
AAAGCTGGGGGTTGTGTGGTCGCGTCTCGGAAACCGGTAGCGCTTGCAGCAT1260.10324822183617949No Hit
CATTGTGGGGTGTTAAGGTATCTCAGAAAGATGAGAGGGCAGAAAAAGCATT1230.10078993084007998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)