FastQCFastQC Report
Sat 31 Dec 2022
SRR5848852.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848852.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120630
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT6840.5670231285749813No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC5250.435215120616762No Hit
TTAAAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC2150.17823095415734064No Hit
TTCGTTGGGGATCACTTGAGATCAGGACTTTAAGACCAGCCTCGGCAACAAC1590.13180800795821934No Hit
TAAGCGGGGGGATATGAAAGGATGTGTCTTATTGTTTTATGCGTTAAGGATA1550.12849208322971067No Hit
ACTAAGGGTATAAGAGAAGAAATATTGGAATACTGCATTTGTGGTGGAAGGT1540.12766310204758352No Hit
ATTGCTGGGGCAAGCAAACAGGCGATTACAGTGCAGGGGACTCGCGCAGCAG1420.11771532786205754No Hit
GTTTTCGGGATCTTACAAAATACACATTCTTGCTTGTGTGTCTGTGTGTGTG1420.11771532786205754No Hit
TGCACGCGGATTGTAGAGACACCACCCATGGTGGTTGTGGGCATTGTGGGCT1410.11688634667993036No Hit
GAGTCGGGACAATAATATTGGGAGACTTTTACACCCCACTGTCAATATTAGA1390.11522838431567604No Hit
TGTGCAGGGGATGAGCTCAATCGGCACTGGGTATGACCTGTCAGCCTCTACA1380.11439940313354886No Hit
TTTGGTGGGAGACGTCTGAATAATTCATTATTCGAGCCCAGCTCTAGTACAA1370.11357042195142171No Hit
AGTGATGGGATTGTCATGTCATTGGAATCATATAGGATGTTGTCTTTTCAGA1350.11191245958716736No Hit
TCTAATTGGGACCTTTTGCTCATGACCATCCATAATGTGGATTTTTGGTACA1340.11108347840504021No Hit
TTTTCAGGGCTTCACATAAAAAATAGGGTGTTAATACCACCTTTACTGTACT1340.11108347840504021No Hit
GCACTTGGGCTGCTGCCTGGGAGCTGAGGCACCCGTGCCAGTGGCAGAGGCC1300.10776755367653156No Hit
GCGTAATGGGGTGAATAAAAATAATTTTAGAAAAGTTATCTATTTTTATTGT1300.10776755367653156No Hit
AACGACGGGACCATAGAACCCAGGGCAGGGAGAGAAGAACCTAGAGGCCTGG1290.10693857249440437No Hit
TCGATGGGGATTTCAATTGTGGAGCCTCATTTTAAGTGTTCATTCTTTTAAG1280.10610959131227721No Hit
CCGTATGGGATATGTCTTTGTATTACATCCAGCCAGCCTCAGAGGCTGGCCC1270.10528061013015005No Hit
CTCGCGGGGAATTTACCTCAGTTTAAAAAGATGTCTGCTATTTTGAATTTTA1260.10445162894802287No Hit
GTAGAGGGGGTATATATTCAGTAATGGAATTGCTGAGTCAAATGGCATTTCT1250.10362264776589572No Hit
GTGTAAGGGAAGTAACCACATCTCAGGCGGCAGTGAAGTCCAGATAGTTTTG1250.10362264776589572No Hit
AACACAGGGGCCTTTGCTTGCTGTGTGGAAAAGGATTGGAGTGGGGCAAGAA1240.10279366658376854No Hit
TTGACTGGGATGAACGATATGGCTGTGAAGACAGAATGTGAACTAAAATTGA1240.10279366658376854No Hit
AAACCTGGGAGTATAATTTTTCATGACTAGTAAGATAACACATAAATGTGGT1240.10279366658376854No Hit
ACTATAGGGATCCTAGAGTTGGTGAGTCTGAAGCAAGACAGGGCAAGACCTA1230.10196468540164139No Hit
CATCTAGGGGAACGCGGGGCGAGCGGAGCCGGCTGAGCGGGCGCCGAGCTCC1230.10196468540164139No Hit
GGTTTTGGGGCGAACGGCGAGCAGCGGCGGCGGCGCGGAGAGACGCAGCGGA1230.10196468540164139No Hit
AAAAACGGGCAACACCCTCATACCAAAGCCAGATAAGGACACTACAAGAAAA1220.10113570421951422No Hit
AATTGCAGGGAGAGGCCGCCGGATGGCGTAGGATCGGCCGCTGGTGGTGGTG1220.10113570421951422No Hit
ATTCTAGGGAACCTCCCACCTAACTTAAGACTCATCTTGAAACCATCCCTAT1220.10113570421951422No Hit
AGTTTAGGGTCAGAATGACAGGGCAGTGGATTACTGTTTCTGGATCACCAGA1210.10030672303738704No Hit
TTGGCGGGGACAGATTTGTATTCTCATTCTAGAATGACCATTTACAAGTTGT1210.10030672303738704No Hit
CTTTGTGGGGGGGCACTGCAGGGAATGATGGGAAACTGTAAGTCTGCTCAGC1210.10030672303738704No Hit
CTCACATGGGCTTCATAAAAACAGTCAGAGTAAACAGAAAGAAGTAGAAGGA1210.10030672303738704No Hit
GCATGAGGGAACCTGTATTTATCACATTGTCAAACAGAATTTTTCTTTGAAT1210.10030672303738704No Hit
TGCATGGGGACCCCAACATGGCTGCGCCCGTGGGACCGGTGAAGTTCTGGCG1210.10030672303738704No Hit
AAGACAGGGACTTTGAGAAGGTCATGCATACAAGGAAGAGGCATATGGAACT1210.10030672303738704No Hit
TGCTGTGGGACTGGCCCCTGGAGACATGGAACTGACACCTTCCTCTGCTACC1210.10030672303738704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)