FastQCFastQC Report
Sat 31 Dec 2022
SRR5848846.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848846.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137349
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC5940.43247493611165716No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT5770.42009770730038076No Hit
TCTAGTGGGTTTCACAAAGCAACTATTCTGGTTTAGCCATGCAACCGGGTCA1500.10921084245243869No Hit
CGCGTTGAGGGATATGCAATGCTTTCTGCAAATGGTAAGGAAAAAATTGTTT1500.10921084245243869No Hit
TCCTAGGGGGGCTTCTTGTCAGGGTAGTAACATTTTGCAACCAAATCTGCAC1480.10775469788640617No Hit
AGCAGCTGGGCAGAGTGGCTTCTTTCACTTACTTATGTGCATTTACATTTCC1440.10484240875434114No Hit
ATAGCAGGGGAGTACCAAGCACCTAGAAAGCCTTCTGAAATGGTAGAATGGT1430.10411433647132487No Hit
GTACAGGGGAGGGAATAACATGAGAAATGTTAACAAAGATACAAAAAGGTAA1390.10120204733925983No Hit
TCGCCGGGGACAGCACGGCAGTCAAATCTTAAAGCCCCAAAATGATCTCCTT1390.10120204733925983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)