FastQCFastQC Report
Sat 31 Dec 2022
SRR5848845.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848845.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136825
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT6080.4443632377124063No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC5410.3953955782934405No Hit
GTACAGGGGAGGGAATAACATGAGAAATGTTAACAAAGATACAAAAAGGTAA1610.11766855472318655No Hit
AATGTAGGGATAGTATTTGACTAACTTTAAGAATATCACCTATATCCAAATA1600.11693769413484377No Hit
AGCAGCTGGGCAGAGTGGCTTCTTTCACTTACTTATGTGCATTTACATTTCC1530.11182167001644436No Hit
CTATTGGGGATTATTCATGAGGCAAATGAGGAACAGGGCAATAGTATGATGG1520.11109080942810158No Hit
CAGCCTGGGCGACAGAGAGAAACTCCATCTCAAACTAAATAAATAATTAAAT1490.10889822766307328No Hit
CGCGTTGAGGGATATGCAATGCTTTCTGCAAATGGTAAGGAAAAAATTGTTT1440.1052439247213594No Hit
ATAGCAGGGGAGTACCAAGCACCTAGAAAGCCTTCTGAAATGGTAGAATGGT1430.10451306413301663No Hit
CGCTATGGGGGCAGTGGGGCCGGCGCATGCGCGCTGCGGAAGCTGGTGCTGG1430.10451306413301663No Hit
CCCCAGCAAACCACAGCAGCCCTACAGAAGAGGTACCTGACTGTCGATAGAA1400.1023204823679883No Hit
TATGATGGGGGAGACGGCTGGGCGCCGAGTGGGACAGCGCTGGTGCGGAGAC1390.10158962177964555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)