FastQCFastQC Report
Sat 31 Dec 2022
SRR5848835.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848835.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99282
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGCCGTCT7280.7332648415624181No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTCCAGGTATCTCGTATGC6460.6506718236941238No Hit
TGCATGGGGGAGCAAAAAAATAAATCAACAGACAAAGGTGAAAAGAAGCCAG1730.17425112306359664No Hit
ACAACTGGGAGGGGGACCTCTATTATTATTTTTGCCTGTATTGACCATTTCT1510.15209202070868838No Hit
TAGCAACGGGTAGACTGAGCTTTATGCACACAGGTGGACTGGGTGGTTATGG1490.15007755685824217No Hit
AGAGCTGGGGGGGCGCGGGGAACTGAAAGCCGGAAGGGGCAAGACGGGTTCA1440.14504139723212667No Hit
TCATCGGGATAATTTTAGATAATTTATTTCCAGTGTTTTCTGCATGTTCTCA1390.14000523760601116No Hit
TATGAAGGGGTGGACAGCTGGCGAAACTTCCAAGCCAATACGAAGGGGAAGA1360.13698354183034187No Hit
AGAATGGGTCTGATGTGGGGGGAATAAAAACATACTTGAACACAAATTATTT1340.13496907797989566No Hit
AACTCTGGGGCTACTTATTTTTTTTCTTTTCTGAAATGAAAACATGAATCTT1330.13396184605467254No Hit
TAAGCTGGGGGACTAAACTGAAGTGTACTTTAATGATCTATTGCCACCACTT1320.13295461412944945No Hit
AGTGATGGGGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGA1310.13194738220422636No Hit
CGCAAAGGGATCCAGATCCAGGAGGCCGCCAAGAAGAAGCCAGGCATCTTCA1310.13194738220422636No Hit
TGATTAAGGGCAGCCGGGAATCTGGATCTGCTGGCTCCTAGTCCAGGGCCCC1280.12892568642855703No Hit
TAGCACGGGCACAAAAGAACTGACAAAATATTTAGAACTAAATGACAGTGAA1280.12892568642855703No Hit
GTTCATGGGGAGGACAAAAAAAAGTTACATTTAATCTATGCATTTTTGCCAA1280.12892568642855703No Hit
TCGTTGGGTAGCAGTGGATTTGTAAAAATTTTTAGTTTATAAATTACAGTCA1260.12691122257811083No Hit
TCAGGCTGGGGGGTAATTTGGGGAAGGTATTCGTGGTGTTCCTGTTTGCAGT1250.12590399065288774No Hit
GATGTTGGGGAGTCCCCCTTGAACGCACCTCAGGATGGCCCGTACTTTGGAA1240.12489675872766463No Hit
TCTACCGGGCCTTCTTTAAACCTTGATTAACCCATTTATAAAATGGGAATAA1220.12288229487721844No Hit
ATCCAGGGACAGTGAATCAGATAAAGCGATCACACCCCAAGCACAGGAGGAG1220.12288229487721844No Hit
ATCCCCGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGA1220.12288229487721844No Hit
GATAAAGGGGACATCACATGCTCATGATTGGAAGAATTAATGCAGTTAAAAT1220.12288229487721844No Hit
AACTGAGGGGATCTGAGCTGGGGCATCTTACATGATCAAATCATCACAGAAT1210.12187506295199534No Hit
GCCGCTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1210.12187506295199534No Hit
TTTTATGGGCAAGACCATGATAAGGAATGAGGAAGTAACATAATGGAAGGAT1200.12086783102677222No Hit
ACTCAGGGGTGGCTGAATGAATTATTAAATGCCAAATCTTAGTCCATACATT1200.12086783102677222No Hit
TCAGTGGGGATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCC1190.11986059910154911No Hit
AAAGCAGGGCAGCAGGGCTAATCCTTACATTGCACCACCCCAGCTGCAGCAG1190.11986059910154911No Hit
TGTAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1180.11885336717632601No Hit
TTGCAGCGGGACCATTATGACACCCAAGTACAGCTGCCATCTATCTTCTCTT1170.11784613525110292No Hit
GATAGTGGGTAACAAAGAGCACTAAGTTTTAATTTAAATAGGAGATTTAACA1160.11683890332587982No Hit
GAAAATAGGGGGATTGTTTGAAAGTCTCTAAGATAAGTTTAGGTCACCAAAT1160.11683890332587982No Hit
TTGTAGGGTGATGACATTGAAAATGTGATCTTTTCTCTAGTTCACAGGGAAG1160.11683890332587982No Hit
ACAGAGGGATAAGAAATGTATGCACTGTTTGAAATGTAAATTATTCTTAGAA1160.11683890332587982No Hit
TTTACAGGGGTTCTCAGTTGCAATAGCTAAAGCAATAATCCTCACTTTCACC1150.11583167140065671No Hit
GTAGTTGGGCCTAAATAAATGAGCTGTTGGAAGAAAAGAATCACAGTACTTT1150.11583167140065671No Hit
TGTGCCGGGAGAAACTGAAAGCTGTATGTCAACTTTATAAACATAATTCAAC1140.11482443947543361No Hit
AAGGCTGGGACAGAATGGCAAGCTGGATAAAAAGACAAGACCTATTGGTGTG1140.11482443947543361No Hit
TTAAACGGGGTTTCTGAATTCTTCAAAAATGATTCGGAAAGCTTTTTTTTTT1140.11482443947543361No Hit
AAAAATGGGATTAAGCTAAACTCTGACTTTCATAATAAAAGGGATAAACAAA1130.1138172075502105No Hit
ACAGCTGGGTGAGGCTCAAGTTCGGCTAAAGGGAGCTGGCCTAGGAGCCAAA1130.1138172075502105No Hit
CAAGGCGGGTATTGGGCAAGTTAAAGAGCATGATGAATGTTTGTACTATAAT1120.11280997562498742No Hit
GCATTAGGGGAGAAGTCGCTTAGCTCTTCGGTGGTTGTCACACGTCCGGAGG1120.11280997562498742No Hit
TTTTCTGGGCGTGAAGATCGAGCACGACTGGCGCAGCACCGTGCATGGCGCC1120.11280997562498742No Hit
GTCTTAGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTA1120.11280997562498742No Hit
AATTCAGGGATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT1120.11280997562498742No Hit
CGTTGGGTAGGTGAACCTGGAAAAAACAAGCAAACAAAAACAGAATAAAATG1110.11180274369976431No Hit
GCTAATGGGAGTGTGTGTAAGATTTTTACCTTCCTTTCTAAAGTTTTTTTTT1110.11180274369976431No Hit
GTTTTGGGGGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAAT1110.11180274369976431No Hit
CTGTCAGCGGGATACTCATTCACTGTAGTTTATTAATGTCAATAAATATAAT1110.11180274369976431No Hit
AAGTGAGGGAAGACAATAAGATGTTTCTTATTCACTGTCCAGTGTCGGCAAG1110.11180274369976431No Hit
CATAGGGGAAGTTTTAAAAAAGGTTCTGTAGACAGAAAACAGTTGTTGCAAC1100.11079551177454121No Hit
AGCCCGGGGGAGAAAGGCTTTCTTTTTCCCAGAGGTTTCAACAAAATCTGGG1100.11079551177454121No Hit
CTGTAGGGAATATAATATGGATCAGAGCATTTATTTTGGGGAGGAAAACAGT1100.11079551177454121No Hit
TAGTTTGGGGCAATGCAAATGTCTAATTGTCCCCCAGTGGGCATAGTCAGTG1100.11079551177454121No Hit
TTTCATGGGAATTTAAAACAATCCTTTCATCCTCTAGGCAAAAATTTACATC1100.11079551177454121No Hit
CTCTCTCTAAGGGATGTGCTAGCCTTATTAATTAAATGTCAATAGAGAAATA1090.1097882798493181No Hit
TGGGCAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1090.1097882798493181No Hit
TCTTTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1090.1097882798493181No Hit
TCGACTGGGGGATTTTCACTGGAAAGGGCAGAGACTTACTAGTGGAAGAGAA1090.1097882798493181No Hit
CTGTCAGGGGGCCGCCTACTGAAGCCGGCGCTGCTCTGTGGGGCTCTGGCCG1080.10878104792409501No Hit
CTACAGGGGCACTTGCCATATATGTGCTGATTTTCCCCAAATTCCTATTTCT1080.10878104792409501No Hit
ACTGTAGGGGAAGTAACTAGTCCGTAGTTCGAGGGTGCGCCGTGTCCTTTTG1080.10878104792409501No Hit
GCGTAAGGAACCAGGGGGGCTGTAGTGGCTTCGTCTTCGGTTTTTCTCTTCC1080.10878104792409501No Hit
GCTCTTGGGTCTGATAAAGGGATGAACAACTATATCCAACAATATGGAAAAC1080.10878104792409501No Hit
TCATTAGGGCCATCATCCCATTGATTCTCCATGTTGCCTCCAGGGAGAGGTT1070.10777381599887191No Hit
TTCTCTGGGAGGTTCAGCATAAAGACTCTGTGTGTTTCTTGTTAAGTCAGCT1070.10777381599887191No Hit
TTACTTGGGCTCACACTCCATATTCATGTGATTGGCCTGTGACTTTGATTCT1070.10777381599887191No Hit
GTGGCCGGGCCTCAACCTAACTGGGTCAATTACCTGCTAAAACAATAATATC1070.10777381599887191No Hit
TATAGCGGGTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCT1070.10777381599887191No Hit
ACACATGAGAGTAGACTGGTCCCTTGATCAGAAGCATCAGCACATCAGCATC1070.10777381599887191No Hit
CTCTGCGGGGGGCAATGAGCCAGGTGCAATAGCTCATGCCTGTAATCCCAAC1070.10777381599887191No Hit
CAGACCGGGATAAATTATTTGAAAAGAAACTTTTGTAGAAAGTCCAAGAATA1060.10676658407364881No Hit
GTCGGTGGGGACCCTGACTGTTTCTCCCTTGGGAACCTCACCATAGGCCAGA1060.10676658407364881No Hit
GATTTGGGGGAAGATTCTCAGTCATATTCTAAAGAGTCTCTCTCTTTCCCAG1060.10676658407364881No Hit
GTCTAGGGCGCCGTGTACGCCTTCCACCTGTGCGAGGATGGGGCCGAGCCCA1060.10676658407364881No Hit
CCACCTGGGTAAGCCGGGGGGGACTGGTGGTTCTGAGCACATAGACGCCTAT1060.10676658407364881No Hit
ACAAGAGGGATACCACTAGCTACTTGTTTTCTAATCTGCTTCATTCTAATGC1060.10676658407364881No Hit
AGACCAGGGCACAGTACTTTCCAGCAGTCAGTCCCTGGTTCCTAGATGTGTT1050.10575935214842569No Hit
CCATTTGGGACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCC1050.10575935214842569No Hit
AAGACAGGGAAGGATCATCTATGTATTCAAGTAATTATTTTTTAGATAATAA1050.10575935214842569No Hit
CTTCGCGGGTCATCCGGGGTGTGCTCTAAAGAATATGGTAGTCACTGATAAT1050.10575935214842569No Hit
CCGTTTGGGCACCCACCCAGCATGGTCAGGCAGCCCTGCTGTGTGCCCGGCG1040.10475212022320259No Hit
GATCCAGGGTTCATGGCATTATAGCTTTTGAAGAAAGGCCAGTGATCCAGCA1040.10475212022320259No Hit
TTGTTTGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1040.10475212022320259No Hit
AACTAAGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1040.10475212022320259No Hit
TAGATGGGGGTGATTTAATCGCTATAGCTAAAATACGTCAAATATACGTTGT1040.10475212022320259No Hit
TATGTTGGGATATGAAGGGAATTGTACATCATGCATTCTTTTCTGTTTGCCT1040.10475212022320259No Hit
GGTTAGGGGAAGCCCAAGAAGTAAGCTGAGTTAAGAATGTTTTTCAAGTTCC1040.10475212022320259No Hit
GATGCAGGGCAAGGGTTCTCTCTCCTGCTTGCGCTTAGTGTCCTACATGGGG1040.10475212022320259No Hit
GACACACGGGGATCTGGTTACGGGATGATATAGAGATTATAGAAGTTAAGTA1030.10374488829797951No Hit
CGTTATGGGCACTGTGTAACAAGTCACTCAGTTTTATTTTAACTTTAGACGG1030.10374488829797951No Hit
CTAATAGGGTATCGCAAAGCTGGCCCGAGAGGAGATGGATCGGGCTGTGGCT1030.10374488829797951No Hit
GGTAACGGGCAGTGGAGTTTCAATGATGGACAGCTGTGGCCAGCTGACATGT1030.10374488829797951No Hit
TACTTAGGGATATTGAATGTTTAATAATATGTCACTGCCAGTATACAATTAA1030.10374488829797951No Hit
AGCGCAGGGACATGAATTAATTGTTTCTTTTTACAATTCATTAATTTATTGC1020.10273765637275639No Hit
AGGAAGGCTGATTGTCACTTCTAAGATGGAAAGTTTTTTAAAAATCAGGTTT1020.10273765637275639No Hit
GTTTTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1020.10273765637275639No Hit
ACATGGGGGAGTTTTCTAACTCATTTTTTAAGTTTTCTAGATGTCTTATCCA1020.10273765637275639No Hit
ACAAAAGGGGTCTGCTGATGTTGTATGTTGCCATGTCTCCTAAGTGGTAAAA1010.10173042444753329No Hit
GGTTGTGGGGAGGCTCTACGGGAAGCAATGCCCAAGGTCGCAAAGTATGCGG1010.10173042444753329No Hit
ACAGCAGGGATCCAAACTAAATTAAGTTAAGAAGTTAATTATAACTCCCAGA1010.10173042444753329No Hit
AAAGCCGGGGGCAGTGGTGCTGGGAGTGTCGTGGACGCCGTGCCGTTACTCG1010.10173042444753329No Hit
TATGCTGGGGAATTAACTGTATTCAAACTCTCTCTCAACAAGTCTCAAGTTG1010.10173042444753329No Hit
TCAAGTGGGATGTGTGGACGAGATGCAGAAGATTATGCTATTTCTCATCATT1010.10173042444753329No Hit
TTACATGGGGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACAC1000.10072319252231018No Hit
ACAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGG1000.10072319252231018No Hit
CATCCCGGGTTAATAAAATTTACCATCTTAACCATTTTTAAGGGTACAGTTC1000.10072319252231018No Hit
TGGTTGCGGGGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGA1000.10072319252231018No Hit
CGTCAGGGGAGAGTGACAAAGGAAGCAAGTAGTGGTGGTACTCATTTTTCAC1000.10072319252231018No Hit
GTAAGGGGGGTCTGTGCCCGGAAAGTTTGGCATCATTCGTCCAGGCTGGTAA1000.10072319252231018No Hit
ATGTTTGGGTGGGTGACAGAGCGAGAGTCAGTCTCAAAAAGAAATAAATAAT1000.10072319252231018No Hit
TAACGTGGGACGGACCTCAGCCTGCCCCTGGGCCGCCAGGTGGCTGCTAAAG1000.10072319252231018No Hit
TGGTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG1000.10072319252231018No Hit
ACGTCCGGGAACCAGGGAAACTCTGGGAAACTCACTGGTAGGAATCCATAAA1000.10072319252231018No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)