FastQCFastQC Report
Sat 31 Dec 2022
SRR5848822.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848822.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138010
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT5190.37605970581841897No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC4270.30939786971958555No Hit
AAATGTGGGGTAATTTCTTTTTTGGTTTGTTTTTTTAAAAGCAAACGAAACG2260.16375624954713427No Hit
TCTTTACGGGGGGAGACGAAGATGGCGGCGGCGGCGGCGGTGACGGCGCTTC2160.15651039779726106No Hit
AGATTCGGGGTATGTTGTGAGCTGTGGGCCTTTATCAGGTTAAGGAAGTTTT1930.13984493877255272No Hit
CCTCGGGGGTAAAACCAGATGATCAGCAAAAGGAAGTGGTTAACATGGCCCA1830.1325990870226795No Hit
CGAATCGGGCTGGCCTACTGGGCTGACATTAACTACAATTATGGGAAATGCA1790.12970074632273024No Hit
AGCAGCGGGGCGGCTTAGCTTGACTGTGACTATTTAAACCTTGGCCCTCCAC1780.1289761611477429No Hit
GTTGCTGGGTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCCGTCT1750.12680240562278094No Hit
CATCTGGGGATGGATTGCTGGTCTTCCGAGCTCTATAATGTAGTGAAATAAA1750.12680240562278094No Hit
CGAAATGGGAAGACAATTTACAGTCTTTGACTAAGCATCCACACTGGAAGAA1740.12607782044779364No Hit
CATCATGGGATAGGAAGTAACCGGTTTTGTGAGGATTGGATGCAAGCTTTTT1730.1253532352728063No Hit
ATATACGGGAGTCCAACTGTTACAACCACTCTAAAAAACCTTGGGGCACTTT1710.12390406492283168No Hit
GCGGTAGGGGAAAACCAATCAGGTGAATTCACCATAGTAACAAACTGAAAAA1710.12390406492283168No Hit
TGCTTCGGGGACAGTGTTGAAGCAGGGTGAATAACTAGGGCATATATATTTT1700.12317947974784435No Hit
GCTACTGGGCTCGGAGCATGGCAGCTAAGTTAGTGAGGGAAGGTGAGATGGA1700.12317947974784435No Hit
TTAATAGGGAACCATTAAGCTGTAGTGCCTCCTTTACCAATGCTGACCATTA1690.12245489457285703No Hit
AGCATAGGGGACGTGGAAGGATTTGAGTGTGGTTTCTATGTGGCAAGATCAA1680.1217303093978697No Hit
CTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAA1680.1217303093978697No Hit
TAAGGCGGGAGCGCGAGCAGCGGGAGCGGGAGCAACGCCTCGAGGCCTTCCA1680.1217303093978697No Hit
CGAACGGGGTCCTATGTGGTCTTTTATCTTCCATGTAATGGTTTTCAGGCAT1660.12028113904789509No Hit
TCTTCTGGGGGCTCCGCGCACCTGGGCGCCATCCGCCCTGGCTCCGCTGCAC1640.11883196869792044No Hit
AGCCATGGGAGCTTGAGTGAAAGGAGGGTGAGGCTGCCGATGCCTTCCTGCC1630.11810738352293311No Hit
GTCTTTGGGCAATCTTACAACTCATAGCTTCCTGACTATTTTCAGGTATTTT1620.1173827983479458No Hit
AATATGGGGCTTTTAAAAATCAAAGTCCAACAGCAGTGTGTTACTTACTGTC1620.1173827983479458No Hit
CATGTCGGGTCAGCCTGGTTTGAATTTAATCATCTCTTTAGATCTTATAAGG1610.11665821317295849No Hit
TACGCTGGGATCTGAGTTGCGGGGAGGAAATTAAACAGAAACATGATTAGCT1610.11665821317295849No Hit
ATAGTGGGGGACACATGAAAGGAGGTATAGGAACTTTGGCATTCGTTTCTGC1600.11593362799797116No Hit
GTACAAGGGTTAAATTTAGCTCTTTAAAATCCTTGTCCTATGTCTGACTTGT1580.11448445764799653No Hit
ACATCCGGGATACACCAGTCTAAGCACCTGGGCTAAGACTGGAGCCCATGAT1570.1137598724730092No Hit
GTAGGCGGGACCTGCGGGGGTTTGTCCTGCAGACCCTGACTCAACGACGGAT1570.1137598724730092No Hit
ACTCGGGGGACTTTCTGTGTGAGTATGTTACAGTATTTCTTTCCATTCTGCA1570.1137598724730092No Hit
AAAAGCGGGATTGCGCAATTATAGATCTGGATTTTGAACCACTTAATGAAGC1550.11231070212303455No Hit
CGCAATGGGTTTGTAGGAATTTATTTATGAATGTCTATGGCCTGCCAGTGTA1520.1101369465980726No Hit
AGCTTGGGGGCGGCGCCGCCATGGCCGACGTGGAAGACGGAGAGGAAACCTG1520.1101369465980726No Hit
GCAATGGGGAACAAAGGCTGTGAGTTCTCCTCTTTCCTTCCACAGGACAAGG1510.10941236142308529No Hit
ATTCCTGGGGCATATAATTTTATATTCTGCTTTTGTTATCATTTTCCTTGTT1500.10868777624809796No Hit
GCTGCCGGGAGTCTCCCAGCAGGTAGGCCTTGCCAAGCCTAAGGCTCCCCAT1500.10868777624809796No Hit
GTTACAGGGTAATTGAGAGGTGAGAACATAAGATTTCCTCTGGAAATTTGCT1490.10796319107311064No Hit
GCATTAGGGGTCATTTTTCATAGGCTTAGGTGTCAAATTTTTTCTGATCACA1490.10796319107311064No Hit
TCTTTGGGGTGACTTAGTGTGTACTGTCTTAGCATTACATTCTACTTAGTTC1490.10796319107311064No Hit
TGACGGGGGACGGCCCACGGTGGGCACCAATCTTACTGACATCGTGGCACAG1490.10796319107311064No Hit
CTATCAGGGGGCATAACTTTGTCCCAAGAATTATTTGTTGTAAAAGTGAGAA1490.10796319107311064No Hit
TAGAGGGGTAAATTATTCTCCCATTGATGAGGAACTTTACCTTATCCCTCAG1490.10796319107311064No Hit
ATATATGGGAGACAACCATCTGTGAGGTCAGTCATTTTGCATGATGTATGTA1480.10723860589812334No Hit
TGCAGTGGGGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGT1470.10651402072313601No Hit
TGTCCAGGGGATCTAAATTCGGGGGGTGTGCTGATGGAGCGGGCTGCAGATG1470.10651402072313601No Hit
TGTTGAGGGGGGAGGAGGTGGTGGCCGTGGGTTCCTGATGTCGGTGCAGGAG1470.10651402072313601No Hit
GTATTGAGGGAATTAGTTTCTCAGGAACACAAACCCTATTGTGAACTGCGTA1470.10651402072313601No Hit
AATAACGGGCTACAGAAAATAAACAGGGTGATCATAATTACCACATCAAATT1470.10651402072313601No Hit
ACTTACGGGGAAAGGAGATTTGATATGTGTATCTTATGGCTCAGTATGCCCT1470.10651402072313601No Hit
AACTACGGGACATGCAAATAACAGACTTTCCATAATCTACTGTGACAAGGTG1460.1057894355481487No Hit
AATGATGGGGAAGCACATGATGATTTTGTGGTCCTTTATGGTTTCTATTACA1460.1057894355481487No Hit
CTTTCAGGGGTATCCAGGAGAGGAACTGCATAACCAAAGGGGTGACCAGCCC1460.1057894355481487No Hit
TTTATGGGGGTGAAGCTTGGAACAATAAAACCAAAGGAAGAATACATCAGAG1460.1057894355481487No Hit
TTGGAAGGGCGCTATGCAGTCAGGGATGAGAAGGGGATTGTGATTGAGTAAA1450.10506485037316136No Hit
TATTAGGGGATCTTTTGGAGGGACACGTACCCAGCAATATCAGTTGTAAGCA1450.10506485037316136No Hit
ACTTTTGGGAGCAGATATATACCTATAGTTTAAGTGAAATGATGTACATATT1450.10506485037316136No Hit
CTGCGGGTCTACAAATCCATTTAAATGGTATTGGAGGGTGAGTAAAACCTTG1450.10506485037316136No Hit
GTGGTCGGGGAGCGCTGGAAACTGGGTGGACGGCATGGGTTGGTCTCAGGAT1440.10434026519817405No Hit
GTTTTAGGGCACAAAAAAGAAAAAATAAATTGGACTTCATCAACATCTAAAA1440.10434026519817405No Hit
CCTACAGGGGCGAGCCTGCGTTTTCCGGCCAGAGGACATGATGCAGGGGGAG1440.10434026519817405No Hit
ATGACAGGGGATAGTCTTGGATTGCATTAAATGCAGCACATTTAAAAATATG1440.10434026519817405No Hit
CTGCAAGGGAGACCCCAGAGGGAGAGGCCCACCCCGCCCAGCCCCGCCCCAG1430.10361568002318672No Hit
GTCGGCGGGAGTATTGGGCAGCATTCTTGGAGCACTGAAGGCCATTGTAAAT1430.10361568002318672No Hit
AGGCATGGGGAATCTCTTTGGTGTAGACCTATAAATAGATTCTCGTCTTTTC1430.10361568002318672No Hit
GATATAGGGCATATATTCAATTTTTGTAATTCAAGATAACAGAGCTTATCAT1420.1028910948481994No Hit
GGTTACGGGAACTAAAAAGCAAAACAACCTACATTAGTCATCTAGCCATTGT1420.1028910948481994No Hit
TGGTTCGGGGCAGCCAGACCTGGTGGTCCTTTCTGGATTGCACATGATGGAG1420.1028910948481994No Hit
TAACAAGGGCTGGAGAATGCATCCATCCTTTCAGAGGGCTCTCTGCAGGAAG1410.1021665096732121No Hit
ACTAGGGGATGTCTCACATTTTAAATCAAAAGCTAGAAATGAAGCTCAATGA1410.1021665096732121No Hit
GAACAAGGGATAGAGAAATATTATAAGATTTTATGATTATTCTTGACGTTTT1410.1021665096732121No Hit
TAGGCAGGGGAATCGACCTCCATCCTGAGCTCTCCAGGCCTGGGACAATGGA1410.1021665096732121No Hit
CAAAGAGGGAGCAAAATCAAAGTGATTTGGACAAATATGGGAAACACAGTCT1400.10144192449822477No Hit
GAATACGGGCTTCCCCCTCTTTCTTTAAAGAACTGCTCAATATTCAATCTGT1400.10144192449822477No Hit
TTAAACGGGATTTGTTACAAGTTAAAGTCCAGAAGTATACACAAGATTGATT1400.10144192449822477No Hit
TGCATGGGGTTTTGTGTGTTGTAACTTTTACCCTGATTTATTGGGAAATTTT1400.10144192449822477No Hit
TGCTGTGGGCAATGTGAATGCACTCAACACTGAACTGTTCCTTAGAAACGGT1400.10144192449822477No Hit
CATACTGGGAATAAAAGAAAGTGAATAGATGTTATTTCCTACTTTAGAAAGT1400.10144192449822477No Hit
CTCTGACGGGATGTGCAGTACTTAATGTTTGTAAGACTTACAAAAAAAGATT1400.10144192449822477No Hit
AAAATAGGGGGGCCCTGCCTCGGGTCCTGGGCCTGCTCCCCGCTTCCTCCCC1390.10071733932323745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)