FastQCFastQC Report
Sat 31 Dec 2022
SRR5848810.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5848810.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180797
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGCCGTCT10030.5547658423535788No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCATAGAATCTCGTATGC9210.5094111074851906No Hit
TCGAATGGGGCCTGGCTTACTTCACACAACATAATGTCCTTCAGGTTTATCC3040.16814438292670786No Hit
AACCCCGGCAACTACTAATTTTTTTTTACTGTCTTCATAGTTTTGCTTTTTC2240.12389586110388999No Hit
CCTGCGGGGACGTGCTGAGCTCGCGGGTGCGCACGGGCCGCAGCATCCGTGG2160.11947100892160821No Hit
TTTCTAGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA2150.11891790239882298No Hit
ACATATGGGGAATCCCCTCAAAAGGGGTCTGGTTGCTGCTTACAGTGGTGAC2070.1144930502165412No Hit
GGCACGGGGGTGGGCTACACGACCGCTTTTGGGGCCATGTTTGCAAAGACCT2000.11062130455704465No Hit
TGATACGGGCGATCTGCTGGCGGGAGGCCCCTACGGGCTACTACAACCCTTC1960.10840887846590373No Hit
ATATATGGGCAGGACAGGAAGTAGCACTTCTGAAACAGGAAGTGGTCTGGCT1890.10453713280640718No Hit
GTCAAGGGTCCTCATAATTTTCTAAATACGATAAAGTGATAATTTCTTCATC1860.10287781323805151No Hit
TCAAATGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAAC1830.10121849366969585No Hit
AAGCTGGGGGTCACAGGGGTCTTAGTCGTGACCACATGGCTGTTGTCAGGTC1820.10066538714691062No Hit
GTTGATGGGCATCACACTGGTTGTCTTCTTTCTTCTTTAGAAAAGTAATGAT1810.1001122806241254No Hit
TGTCAGGGGACCTGTCTGCTGCCAGCACAGTAGGTCCCGGCCAGCTCTGGAG1810.1001122806241254No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)